Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5840 ATGGCAGGCTTCAGCGGCGACGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCACTCGTCTTCTCCTGTATGGGAGCTGCATATGGAACTGCGAAGAGTGGAGTGGGAGTGGCATCGATGGGAGTGATGAGACCTGAGCTTGTCATGAAATCGATTGTGCCTGTGGTTATGGCTGGTGTGCTTGGAATTTATGGGTTGATTATTGCTGTGATTATCAGTACTGGAATTAACCCTAAGGCTAAGTCTTACTATCTCTTTGATGGATATGCTCACTTGTCTTCTGGTCTTGCTTGTGGCCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATTGTTGGTGATGCTGGAGTCAGGGCCAATGCCCAGCAGCCGAAGCTGTTTGTTGGTATGATTCTTATCTTGATTTTTGCCGAAGCTCTTGCTCTGTATGGTCTCATTGTGGGTATCATCCTCTCATCCCGAGCTGGCCAATCTCGTGCTGAGTAA 495 0.501 MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5840 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Lja1g5840 164 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lja1g5840 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Lja1g5840 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Lja1g5840 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Lja1g5840 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja1g5840 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja1g5840 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja1g5840 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja1g5840 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Lja1g5840 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Lja1g5840 164 Gene3D - 10 161 IPR035921 -
Lja1g5840 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lja1g5840 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5840 Lja-Chr1 104919143 104923072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5840 1 164 Primary Pumps ATPases(2) AT2G16510 98.780 2.49e-111 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5840 K02155 - gmx:100777816 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5840 1 104919143 104923072 Lja1g5840 1 104919143 104923072 ECH