Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5839 ATGCAAATACAACTACCCCTGCTGTTAATCATTGCATTAACAGGGTTACTAGAAGTTGCTGCTGCTGCAGCTAATATATCCCTACCCGGTTGCACAGACACATGTGGAAACGTTTCAGTTCCATACCCATTTGGCATAGGCAAATCCACTTTATCAGGCAAGAACTGTTTCTTGGAGGAAAGACTGAGCCTCACATGCGAAAACAACACTTTATACAATGGCAACATCCAACTCCTCAACATAACCCTCCAAGGCCAATTGGACATGTTGTTCTTCGTCTCGCGCCTATGCAACGACACCGTAGACGGGGTAGCTAACCAGCCCTTTCTCACCACCCCTTCTTTCACCATTTCAAGCAAAGAAAACAAGTTTGTAAGCGTTGGATGCAACACCTACGGCTACCTAAACAGTTATTACAACGGGGATGAGTATTCAACCGGGTGCTTAACCAGGTGTAGCAGGTTACCCGATGACATGGTAACCGATGGAGAGTGTTCGGGGATCGGGTGTTGCCAAGTGGATGTTCCTTCCGAAATGAAGAACATCACTATACAAGCGTACAGGTTCGGATCTAGTTCGAGGTTTAGTGATTGTGGGTTTTCCTTTGTTTCCAAAAAAGGATCGTACAAGTTTTCTGTTAGTCATTTGAAGAACCTGCCTTTCACCATGCTCCCTATGGTTGTTGATTGGAGTGTTGGAAATGAGTCATGTGGGGTTTTCGAGAGAGGAGGCAAGAGTGCCTGCATGAAGAATAGCTACTGTGATGATAGTGAGACTAGTTATGGATACAGGTGTAGGTGTGAAACTGGTTATGATGGAAACCCGTATCATCCGAATGGTTGCCAAGACATCGACGAATGTCAGACAAAAAATCATACATGCCTGAGTGATCTTCATTGTCGCAACAATAATGGGTCCTATGAATGCTTTTGTCCTCGTGGGCAGCTTGGAAATGGAACTAACATTGGAGGATGCCAACCAATCCAGCATCAAAGTACTATAACCAAGTTTGCCATTAGTGGATGTGCAGGGTTTTTAACTTTGCTGGGAGCTTCCTGGTTATACTTAATATATCAAAAAAGGAAACTAGTTAAAGAAAGAGAGAACTTCTTCCGGCAGAATGGCGGTTTTATTTTACAACACAGACTCTCAACAAGAAAAGGCTCCCCTCAAACTGCACATATTTTCACTGCAGAAGAGCTAAAGGAAGCCACCAACAGCTATAGTGAGAGCTTAATCATTGGCAAGGGAGGCTATGGTACAGTTTTCAAAGGATTCCTTCCAAATAACAGGGTTGTGGCAATCAAGAAGTCTAAAGTGGTGGGTCAGAGCCAATCTGAGCAGTTCATAAACGAGGTGATTATTCTGTCCCAAATCAATCACAGGAATGTGGTGAAGCTCTTGGGTTGTTGTTTGGATACTGAAGTCCCGTTATTGGTGTATGAGTTTGTTAACAATGGTACACTTTTCGATCATATACACAATGAGAGCAAGGCATGTAATTTATCATGGGAGAATCGTGTTAGAATTGCGGTAGAGGCTGCAGGAGCTCTATCATACTTGCACTCAGATGCCTCCATAAGCATTGTCCATAGAGATGTCAAGAGTGCTAACATTCTCTTGGATGACACTTTCACGGCCAAGGTGTCTGATTTTGGAGCTTCAAGATTGGTTTTTCCAGTTGATCAAGCTGGACTAGCTACAATGGTGCAAGGGACTTTTGGTTACTTGGACCCGGAGTACATGCAAACAAGCAGGCTAACTGAGAAGAGTGATGTCTACAGCTTCGGGGTAGTACTCTTAGAGCTGCTAACAGGGCGGCAAGCGCTTTCGTTTCAGGGGCTGGAAGAAGAAAGAAGTCTTGCCTTGTACTTTCTCTCTTGCTTGGAAGATGATCGCTTGTTTGAAATTCTCGATTTTGGTCTGCTGAGTGATGAAAATAGAGAGGAAATCATGGAAGTTGCTATTCTTGCAAGCAAGTGTTTGAGACTTAAAGGGGAGGAGAGGCCTTGCATGAAGGAAGTTGAAACGGAGCTGAAGGGGATAAGGAAAACAGGGAAGCACCCTTGGCCTAATACAGACCTGAATTTAGACGAGTCCCAATACTTGCTTCATGAGCTATCTGACATCTATAAGGAGAGTAATAGTAACAGCAGCCATGGAAATACTGAGTACGACAGCTTGAGGGGCCATGTTATGATACCCCTTGATATTGCACGTTGA 2223 0.4399 MQIQLPLLLIIALTGLLEVAAAAANISLPGCTDTCGNVSVPYPFGIGKSTLSGKNCFLEERLSLTCENNTLYNGNIQLLNITLQGQLDMLFFVSRLCNDTVDGVANQPFLTTPSFTISSKENKFVSVGCNTYGYLNSYYNGDEYSTGCLTRCSRLPDDMVTDGECSGIGCCQVDVPSEMKNITIQAYRFGSSSRFSDCGFSFVSKKGSYKFSVSHLKNLPFTMLPMVVDWSVGNESCGVFERGGKSACMKNSYCDDSETSYGYRCRCETGYDGNPYHPNGCQDIDECQTKNHTCLSDLHCRNNNGSYECFCPRGQLGNGTNIGGCQPIQHQSTITKFAISGCAGFLTLLGASWLYLIYQKRKLVKERENFFRQNGGFILQHRLSTRKGSPQTAHIFTAEELKEATNSYSESLIIGKGGYGTVFKGFLPNNRVVAIKKSKVVGQSQSEQFINEVIILSQINHRNVVKLLGCCLDTEVPLLVYEFVNNGTLFDHIHNESKACNLSWENRVRIAVEAAGALSYLHSDASISIVHRDVKSANILLDDTFTAKVSDFGASRLVFPVDQAGLATMVQGTFGYLDPEYMQTSRLTEKSDVYSFGVVLLELLTGRQALSFQGLEEERSLALYFLSCLEDDRLFEILDFGLLSDENREEIMEVAILASKCLRLKGEERPCMKEVETELKGIRKTGKHPWPNTDLNLDESQYLLHELSDIYKESNSNSSHGNTEYDSLRGHVMIPLDIAR* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5839 740 SUPERFAMILY Protein kinase-like (PK-like) 389 678 IPR011009 -
Lja1g5839 740 SMART egf_5 236 282 IPR000742 -
Lja1g5839 740 SMART egf_5 286 326 IPR000742 -
Lja1g5839 740 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Lja1g5839 740 SMART serkin_6 408 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5839 740 CDD EGF_CA 283 314 - -
Lja1g5839 740 ProSitePatterns Protein kinases ATP-binding region signature. 414 437 IPR017441 GO:0005524
Lja1g5839 740 SMART egfca_6 283 326 IPR001881 GO:0005509
Lja1g5839 740 Pfam Wall-associated receptor kinase galacturonan-binding 31 86 IPR025287 GO:0030247
Lja1g5839 740 ProSiteProfiles EGF-like domain profile. 283 321 IPR000742 -
Lja1g5839 740 Gene3D Phosphorylase Kinase; domain 1 377 483 - -
Lja1g5839 740 SUPERFAMILY EGF/Laminin 282 318 - -
Lja1g5839 740 Gene3D Transferase(Phosphotransferase) domain 1 484 699 - -
Lja1g5839 740 Pfam Calcium-binding EGF domain 283 318 IPR001881 GO:0005509
Lja1g5839 740 CDD STKc_IRAK 414 682 - -
Lja1g5839 740 Pfam Protein kinase domain 409 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5839 740 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 709 IPR045274 GO:0007166
Lja1g5839 740 Gene3D Laminin 240 322 - -
Lja1g5839 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Lja1g5839 740 ProSiteProfiles Protein kinase domain profile. 408 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5839 740 ProSitePatterns Calcium-binding EGF-like domain signature. 283 309 IPR018097 GO:0005509
Lja1g5839 740 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 17 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5839 Lja-Chr1 104911607 104914591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5839 31 740 Receptor kinase-like Gene Family AT1G21230 45.020 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g5839 Pkinase 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5839 - - gmx:100819535 910.983