Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5837 ATGTCAGAGAACACGAAGAACGAAACTACCAAACCACCGTTTGACGCCGTAGCGGCGACGCTCCTCACGACGGAGCTCAGAGAAACCTTCGCCTCCGGCAAAACGCGGAGCTACGAGTGGCGAGCCTCGCAGCTCCACGCGCTCTCGCGGCTCGTCGCTGATCACGAGAAGCAGATCGTCGACGCTCTCCGAAATGATCTCGATAAGCCGCCGCTCGAAACCGTCGCGTACGAGGTTGCCATGTTAAAAAACTCATGTAATGTTGCACTCAAGGAATTGAAAAATTGGATGACTCCTGAAAAGGTCAAAACTTCGATCACAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTTGGGGTTGTGTTGGTTATCTCTGCCTGGAACTATCCCTTTCTCTTGTCACTTGATCCAGTCATTGGAGCTATTGCAGCCGGTAACGCTGTGGTTCTAAAACCATCAGAAATTTCTCCAGCCACATCGTCACTGCTGGCGAAACTGCTTGGGGAATACATGGATAACTCATCTATAAGAGTTGTTGAGGGTGCAGTTGATGAAACATCTGCATTACTGCAGCAGAAGTGGGACAAAATTTTCTACACAGGGAATGGAAGAGTGGGACGCATTGTGATGGCTGCTGCTGCAAAGCACCTTACACCAGTCGTGCTGGAGCTTGGAGGAAAATCTCCGGTTGTTGTCGATTCAAATATAAACTTAAAGGTAGCAGCTAGGCGGATAATTGCTGGAAAGTGGGGTGGTAACAATGGACAAGCTTGCGTTTCTCCAGATTATATCATAACAACAAAAGACTATGCCCCCAAGTTGGTGGATGCCCTAAAGTCTGAGTTGGAGAAATTTTACGGAAAGAACCCATTAGAATCGAAAGATATATCCCGAATAGTGAATTCCAACCACTTTGCTCGCTTGATAAAGCTCTTGGATGATGATAAGGTTTCTGGTAAGATTGTTTATGGAGGTGAAAAGGACGAAAGCAAATTGAGGATTAGCCCCACTATTCTGTTGGATGTCCCGCGAGATTCTTTGATAATGAGTGAGGAGATATTTGGTCCCTTACTTCCCATCCTCGTGGTTGATAAGCTGGAAGAAAGCTTTGATGTGATCAATACATGGCCAAAGCCTCTCGCTGCGTATATTTTTACATCCAACAAAAAGCTCAAGGAGCAGTTTGTTATGACTGTTTCTGCTGGCGGTTTGGTTGTCAATGATACTACTGTTCATCTTGCAGTTCACACTTTGCCATTTGGAGGAGTTGGTGAGAGTGGATTAGGTGCATATCATGGGAAATTCTCATTTGATGCTTTCAGCCACAAGAAATCAGTTCTTTATCGTGGTTTTTTTGGTGACGCGGCAATAAGATACCCACCGTACACGAATACAAAAATGAGATTACTGAAGGCTCTCATTGGTGGTGGCATAATTGGGGTCATCCGTGCCCTGTTTGGATCGTCTTAG 1476 0.4566 MSENTKNETTKPPFDAVAATLLTTELRETFASGKTRSYEWRASQLHALSRLVADHEKQIVDALRNDLDKPPLETVAYEVAMLKNSCNVALKELKNWMTPEKVKTSITTFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSEISPATSSLLAKLLGEYMDNSSIRVVEGAVDETSALLQQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSNINLKVAARRIIAGKWGGNNGQACVSPDYIITTKDYAPKLVDALKSELEKFYGKNPLESKDISRIVNSNHFARLIKLLDDDKVSGKIVYGGEKDESKLRISPTILLDVPRDSLIMSEEIFGPLLPILVVDKLEESFDVINTWPKPLAAYIFTSNKKLKEQFVMTVSAGGLVVNDTTVHLAVHTLPFGGVGESGLGAYHGKFSFDAFSHKKSVLYRGFFGDAAIRYPPYTNTKMRLLKALIGGGIIGVIRALFGSS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5837 491 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 224 231 IPR029510 GO:0016491
Lja1g5837 491 Coils Coil 45 65 - -
Lja1g5837 491 SUPERFAMILY ALDH-like 26 464 IPR016161 GO:0016491
Lja1g5837 491 PIRSF ALDH 2 481 IPR012394 GO:0006081
Lja1g5837 491 CDD ALDH_F3FHI 19 450 - -
Lja1g5837 491 Pfam Aldehyde dehydrogenase family 29 448 IPR015590 GO:0016491
Lja1g5837 491 PANTHER ALDEHYDE DEHYDROGENASE 8 491 - -
Lja1g5837 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 228 428 IPR016163 GO:0016620
Lja1g5837 491 PANTHER ALDEHYDE DEHYDROGENASE 8 491 IPR012394 GO:0006081
Lja1g5837 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 446 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5837 Lja-Chr1 104873166 104879143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5837 79 489 Aldehyde Dehydrogenase Gene Family AT1G44170 76.886 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5837 K00128 - gmx:100778722 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5837 1 104873166 104879143 Lja1g5837 1 104873166 104879143 ECH