Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5834 ATGGAGTCCTCAACTTATTTCTTGGGTGTAAGGCCTGCAAGTCATTCCATCGCTCAAGATAGTCCGGCTAGAGATTATTTCAACCTTTCTTTTCACTGCAAACATACAATTCACACCCCAACTACAAGATCTGTAGATACATGTGAAGTCATCTTCTCGATCCCTTGTGACAAGTTCCGCAATTGTGATGAGCGCACAATCTTAGAGTGGGATAACGCTAGGGACTTCCATCAATCATTCTCCTCACAAATGCATACTATTGATCCCAACGTAGTAGACGGAGTTCTACCTCACATAGTTGAACATGCTAGGGGTATGCTGACACCAAACACCGAAGGGCGTCTCACAAGGGACATAAATTTCATGCTCTTAGTCTTCACATGGTGTGAAGAAGATGAGGAGGAGGAGGAGGAGGAGGATTATCATCCTTCAGAACAGTGCGCAATTTGTTTAGAAGATCTTAGCAGTGGTGGGGGCTTGAAGTCAGAAATTGTTTCTACTAAATGCTCACATATTTTTCATAGAGGGTGTATTGTTAAGTGGATGCAACAATGTACTAGTTGTCAAGCGTCACACTCATGTCCACTATGTCGTTCTCAAGTAATATGA 609 0.4269 MESSTYFLGVRPASHSIAQDSPARDYFNLSFHCKHTIHTPTTRSVDTCEVIFSIPCDKFRNCDERTILEWDNARDFHQSFSSQMHTIDPNVVDGVLPHIVEHARGMLTPNTEGRLTRDINFMLLVFTWCEEDEEEEEEEDYHPSEQCAICLEDLSSGGGLKSEIVSTKCSHIFHRGCIVKWMQQCTSCQASHSCPLCRSQVI* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5834 202 PANTHER RING ZINC FINGER PROTEIN 130 201 - -
Lja1g5834 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 202 IPR013083 -
Lja1g5834 202 ProSiteProfiles Zinc finger RING-type profile. 147 198 IPR001841 -
Lja1g5834 202 SUPERFAMILY RING/U-box 146 201 - -
Lja1g5834 202 Pfam Ring finger domain 146 198 IPR001841 -
Lja1g5834 202 PANTHER UBIQUITIN-PROTEIN LIGASE 130 201 - -
Lja1g5834 202 SMART ring_2 147 197 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5834 135 201 C3H Transcription Factor Family AT4G12190 37.313 5.71e-10 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5834 - K16282 mtr:MTR_5g094680 103.219