Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5833 ATGTCAAAGTCTCCCTCTGCTGAACAACGGCGGTCGATTTATTCTGCTTCTCAACCCATGGAATTCGATGAGGAAACAGGAATGGACGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTTTGGAGCAGCTGCATGCCAACTTGTCGTCACCACCTGAGAAAGAACTTATTACAGCACGCTTGTTAGGCATTTCCAGTAGAAGAAAGGATGCCAGAGCACTTATTGGTTCTCATGCTCAAGCCATGCCATTGTTTGTAAACATTCTCCGAAGTGGAACCCCTCTTGCAAAAGTTAATGTTGCTTCTACTCTCAGTGTCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGCTGTATCCCACCATTGCTGTCACTTTTAAGACATGAATCCGCTGATGCTCGGAAGGCAGCAGCGGAAGCAATATATGAAGTTTCCGCTGGTAGTCTTTCAGATGATCACGTGGGTATGAAAATTTTTACTACAGAAGGTGTAGTTCCAACCTTATGGAATCAACTAAATCCGAAAAACAGGGAAGACAAAGTTGTCGAGGGTTTTATCACTGGAGCATTGAGAAATCTTTGTGGCGACAAAGATGGCTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATTATTGTGGGTCTCTTGTCTTCAGATAATGCTGTTTCTCAGTCAAATGCTGCTTCTTTATTGGCACGCTTAATGCTTGCTTTTAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTAGAAGCTTTACTTCGACTTGTTGGTCAAGAAAATGATATTTCTGTGCGAGCTAGTGCTGCTGATGCCTTAGAGGCCCTTTCTTCCAAGTCTACTACGGCTAAAAAGGCTATTGTTAGTGCAGATGGGGTTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAAAGAGTGTATGCAAGGCAATGGTGGCCAATTGTTGCAAGAACACGCAACTCGAGCTTTAGCCAACATTTATGGTGGCATGTCTGCTTTAATACTATATCTCGGAGAACTTTCCCATTCTTCTCGCCTTTCTGCACCAGTTGGTGATATAATTGGTGCTCTTGCTTACACACTCATGGTCTTTGAGGAAAAACTTGATGTCGATGAGGAACACATTGATGCAACTCAGATTGAAGATATTCTAGTAAGTCTTCTAAAGCCTCGAGATAACAAACTTATTCAAGAGCGTGTCCTTGAGGCCATGGCTAGCCTCTATGGAAATGTCTGTCTCTCGAAGTGGCTCATTCAAGCAGATTCAAAGCGGGTTCTTATTGGACTTATAACGATGGCTGCCCCTGATGTGCAAGAGTATCTGATACTTTCATTGACAAGCTTGTGTTGTGATAAGACTGGAATATGGGAGGCCATTAAAAAACGAGAAGGTATCCAATTACTGATATCATTGGTGGGTTTATCGAGCGAGCAGCATCAAGAGTACTCAGTTCAGTTGCTAGTAATCTTAACTGACCAGGTTGATGACAGCAAGTGGGCAATTACTGCGGCTGGAGGGATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAAAGAGGATGCTGCTAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCCGCATTTTTGTGGCTTCTTAAGAGTGGTGGACCGAAAGGACAAGAAGCTTCTGCTATGGCACTCACAAAGCTCGTCCGCATAGCTGACTCTGCCACTATTAATCAGCTATTAGCATTGCTCCTAGGGGACTCTCCGAGCTCAAAGGCCCATATAATTCGAGTTTTAGGTCATATACTTTCTCTGGCATCACAAAAAGATCTCCTTCAAAATGGTTCTGCAGCTAATAAAGGCCTGAGATCTCTTGTTCAGATTCTCAACTCAGCAAATGAGGAAACCCAAGAACATGCAGCTTCTGTCCTAGCTGATTTATTTATCACAAGACAAGACATTTGTGATAGTCTCGCAACTGATGAGATTGTGTTTTCTTGCATGAAGCTTTTGACTAGCAAAACTCAGGCTGTTGCCACTCAGTCTGCCAGAGCATTAAGTGCTCTGTCCCGTCCAACAAAGAGCAAAGCTGCAAATAAGATGTCTTATATTTTAGAGGGTGACGTTGAGCCACTAATCAAGTTAGCTAAAACATCATCTGTTGATGCTGCCGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCCGAAGATGTTGTTTCAGCTCTAACAAGAGTTCTGGCAGAAGGAACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCAGTCAGCGACGTTCTCAAGGGGAATGCTCAATGTCGTTTCACTGTGCTTGCACTTGTTGATTCATTAAGAGCTATGGATATGGATGGAACTGATGCTGCAGATGCTTTAGAAGTAATTGCACTGCTAGCCAGGACTAAACAGGGTATCAACTTCACTTACCCTCCAAGATCTGCTTTGGCTGAAAAACCATCAAGCTTAGAATTTCTCGTCTGCTGCCTTACTGATGGGCCCTCCCCTGTGCAAGACAAGGCAATTGAAATTCTGTCTAGACTTTGCGGAGATCAGCCGGCTGTTCTTGGTGATTTGTTATTTGCCAGTTTCAGATCGGTTGGTTCATTAGCTAATAGAGTAATAAACTCCTCCAGTTTAGAAGTAAAAGTTGGAGGGGCTGCCTTACTAATTTGTGCAGCAAAGGAGGAGAAAGAGCTTTCAATGGATTCACTTGACACTTCTGGGTATCTGAAACCATTAATATATTCGTTAGTTGATATGGTGAAGCAGAGTTGTAGTTGTTCTTCATTAGATATTGCAGTTCTCACTTATGGAGGTTTTATGGAGAGAAATGCATTTCAAGAAGTTGATGAGTTTGATATCCCTGATCCAGCCACAGTCTTGGGAGGTACTGTTGCCCTCTGGTTGCTCTCAGTTATTGCTTGTTTTCATATGAAGAGCAAGCTCACAATTATAGAAGCTGGTGGACTAGAAGCTCTATGTAACAAACTTGCTAGACATACTTCAAATCCTCAGGCAGAATATGAGGATACAGAAGGAATTTGGATCACGGCCTTGCTTTTGGCGGTTATGTTTCAAGATGCAGACATCATTCTATCTCCTGCAACTGTGCGCATCATACCTTCTATTGCTCTTCTGCTAAGATCTGATGAAATCGTTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTCATGGTAATAAGGGAATAGATCTTGCCATTGCAAATTCAGGAGCCATTGCTGGATTGATAACCATTATTGGGCATGTAGAGTCAGATATGTCCAATCTAATAGATTTACAAGAAGAATTTTGTTTGGTGCGAAACCCGGATCAAATTGTTTTGGATCACCTTTTTGAAATTGAAGATGTGAGATTGGGATCTGCTGCCCGGAAATCTATACCCCTCTTAGTGGATCTCTTGAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAGGCTCTTGATATGCATTGCAGATGGAAGCGATACAAATAAACTAATGCTGGCTGAAGCTGGAGCTCTTGAAGCTTTGAACAAATACCTGTCCTTGAGCCCTCAAGACTCGACTGAGACTGCCATTTCCGAGTTGTTGAGAATATTATTTTGCAACTCTGACCTTATAAAACATGAAGCATCAATAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCAATTAGTGAACTTTTTGATGCTGACAACATTAGAGACTCAGAATTAGCTAAACAGACCATTCAGCCATTAGTTGACATGCTTAACACAACATCAGGGAGTGAACAAGAGGCTGCTCTCATGGCTTTGATTAAGTTAACTTCAGGAGATTCTTCAAAAGCATGTCTTTTTGCTGAAGTAGAAGGGAACCCACTTGAAAGTTTATTCAGTGTATTGTCTTCTGCTTCATCCCTGGAACTGAAAAGCCAGGCTGCACAACTCTGCTTTACTCTTTTCGGTAATAGCAAGACCAGAGCAAATCCAGTTGCCTCAAAATGCCTAGAACCCCTTATCTCACTGATGCAGTCTAGCTCTGGGACAGCAATAGAATATGGGATTTGCGCTGTTGAGAGACTGTTAGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTTTAATGTTGTGGATCTCATTGTCAGCTTGGTTTCTGGTACAAACTATCAGCTTATTGAGGCTGCCATATCTGCTCTCATCAAATTAGGAAAAGACAGGACTCCAAGCAAACTAGACATGGTCAAAGCCGGCATTATTGGTAATTGTCTCAAGCTACTCCAATCAGCACCTAGCTCATTATGCTCCACAATAGCTGAGTTGTTTCGCATTTTGACAAACAGTAATGCAATTGCTAGAAGTTCGGATGCTGCAGAAATTGTAGAACCCCTTTTCTATGTTTTGCTCCGTCGAGATTTCGACTTATTGGGACAGCATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAGCCACAAAGTCTTGCAACTTTAAAGCTTACTCCTAGCCAAGTCATTGAACCCTTGATTTCCTTTCTGGAATCCGAAAACCAAGCTATCCAGCAGCTTGGCACAGAATTATTATCTCATCTTCTTGCTCAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTTGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCAACAAGCTGGCCAAAGGCCGTTGCTGATGCAGGAGGTGTTTTTGAGCTTGCAAAAGTTATTATTCAAGATGACCCTCAACCACCGCACGCACTTTGGGAGTCAGCTGCCTTAGTTCTCTCTAATGTATTACGTTCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTAGTTCTTGTGAAACTCTTGCACTCAACACATGAGAGTACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGAAAGAAGCGATGCCTCGAGTGCTGAACAGATGGTGGAAGCTGGAGCTATAGATGTTCTGTTGGACCTCTTAAGATCTCATCAATGTCAAGAAGAATCTGGTAGATTACTTGAAGGGTTATTTAACAATGGGAGAGTACGGAAGATGAAGATATCTAAGTATGCTATAGCGCCTCTATCCCAGTATCTTTTAGATCCACAAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTGGGAAATATTTCGCAGCATGAAGGACATGCTAGAGCTAGTAACTCTGTATCTGCATGTCGTGCATTGATAAGTATACTTGAAGATCAGCCAACTGAAGAAATGACGATGGTGGCTATATGCGCATTGCAAAACTTTGTCATGAACAGCAGGACAAATAGACGAGCTGTTGCGGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTAATGTCTCCAAATACTGACATTGCTGGACAAGCAGCGTTACTGATCAAATTTTTGTTTTCTACCCACACGCTACAAGAATATGTGTCAAATGAGTTGATTAGATCTTTGACAGCTGCTCTGGAAAGAGAGTTGTGGTCAACTGCCACTATCAATGAGGAGGTTTTGAAAACTTTGCATGTGATGTTCATGAACTTCCCTAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTAGTAGGGGCACTTAAATCTGGTGGTGAAGTGGCTCAGGACTCTGTACTTGACACCTTTTGCTTGCTTAAACAATCTTGGTCAACCATGCCAATAGAAATAGCAAAGTCTCAAGCTATGATTGCTGCTGAAGCTATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCAAGTTTCCACGAGAGAGCAGATACTCTTCTGCACTGTTTACCAGGTTGTTTGACTGTCATCATTAAGCGTGGAAGCAACCTCAAGCAAACCATGGGAAGCACTAATGCATTCTGCCGGTTAACTTTAGGCAATTCTCCACCGAAACAAACCAAGGTTGTGAATCATAGTACTTCTCCTGAATGGAAAGAAGGATTCACATGGTCATTCGATGTACCTCCAAAGGGCCAAAAGCTTCATATAGTATGCAAAAGCAAGAATACTTTTGCGAAGGCAACTCTCGGAAGAGTCACTATCCAAATTGATAAAGTTGTGACTGATGGTGTTTATAGCGGATTATTCAGTCTTAATCATGATCGCAACAACGATGGTTCTTCCCGAACCCTTGAAATTGAGATCGTATGGTCCAACAGGATTTCTAACGATGACATTTGA 6408 0.4226 MSKSPSAEQRRSIYSASQPMEFDEETGMDDPESTMATVANFLEQLHANLSSPPEKELITARLLGISSRRKDARALIGSHAQAMPLFVNILRSGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLRHESADARKAAAEAIYEVSAGSLSDDHVGMKIFTTEGVVPTLWNQLNPKNREDKVVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVEALLRLVGQENDISVRASAADALEALSSKSTTAKKAIVSADGVPILIGAIVAPSKECMQGNGGQLLQEHATRALANIYGGMSALILYLGELSHSSRLSAPVGDIIGALAYTLMVFEEKLDVDEEHIDATQIEDILVSLLKPRDNKLIQERVLEAMASLYGNVCLSKWLIQADSKRVLIGLITMAAPDVQEYLILSLTSLCCDKTGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLVILTDQVDDSKWAITAAGGIPPLVQLLETGSQKAKEDAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRIADSATINQLLALLLGDSPSSKAHIIRVLGHILSLASQKDLLQNGSAANKGLRSLVQILNSANEETQEHAASVLADLFITRQDICDSLATDEIVFSCMKLLTSKTQAVATQSARALSALSRPTKSKAANKMSYILEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTLEGKQNASRALHQLLKHFPVSDVLKGNAQCRFTVLALVDSLRAMDMDGTDAADALEVIALLARTKQGINFTYPPRSALAEKPSSLEFLVCCLTDGPSPVQDKAIEILSRLCGDQPAVLGDLLFASFRSVGSLANRVINSSSLEVKVGGAALLICAAKEEKELSMDSLDTSGYLKPLIYSLVDMVKQSCSCSSLDIAVLTYGGFMERNAFQEVDEFDIPDPATVLGGTVALWLLSVIACFHMKSKLTIIEAGGLEALCNKLARHTSNPQAEYEDTEGIWITALLLAVMFQDADIILSPATVRIIPSIALLLRSDEIVDKYFAAQAMASLVCHGNKGIDLAIANSGAIAGLITIIGHVESDMSNLIDLQEEFCLVRNPDQIVLDHLFEIEDVRLGSAARKSIPLLVDLLRPIPERPSAPPVAVRLLICIADGSDTNKLMLAEAGALEALNKYLSLSPQDSTETAISELLRILFCNSDLIKHEASISSLNQLIAVLRLGSRNARYSAARAISELFDADNIRDSELAKQTIQPLVDMLNTTSGSEQEAALMALIKLTSGDSSKACLFAEVEGNPLESLFSVLSSASSLELKSQAAQLCFTLFGNSKTRANPVASKCLEPLISLMQSSSGTAIEYGICAVERLLEDEQQVELAAAFNVVDLIVSLVSGTNYQLIEAAISALIKLGKDRTPSKLDMVKAGIIGNCLKLLQSAPSSLCSTIAELFRILTNSNAIARSSDAAEIVEPLFYVLLRRDFDLLGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESENQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGVFELAKVIIQDDPQPPHALWESAALVLSNVLRSNADYYFKVPVVVLVKLLHSTHESTISIALNALIVHERSDASSAEQMVEAGAIDVLLDLLRSHQCQEESGRLLEGLFNNGRVRKMKISKYAIAPLSQYLLDPQTRSQSGKLLAALALGNISQHEGHARASNSVSACRALISILEDQPTEEMTMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLMSPNTDIAGQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVMFMNFPKLHISEAATLCIPHLVGALKSGGEVAQDSVLDTFCLLKQSWSTMPIEIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVIIKRGSNLKQTMGSTNAFCRLTLGNSPPKQTKVVNHSTSPEWKEGFTWSFDVPPKGQKLHIVCKSKNTFAKATLGRVTIQIDKVVTDGVYSGLFSLNHDRNNDGSSRTLEIEIVWSNRISNDDI* 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5833 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Lja1g5833 2135 SUPERFAMILY ARM repeat 1176 1544 IPR016024 -
Lja1g5833 2135 SUPERFAMILY ARM repeat 1611 2005 IPR016024 -
Lja1g5833 2135 CDD C2 2009 2099 - -
Lja1g5833 2135 Gene3D - 1344 1604 IPR011989 -
Lja1g5833 2135 Gene3D - 368 629 IPR011989 -
Lja1g5833 2135 SUPERFAMILY ARM repeat 194 465 IPR016024 -
Lja1g5833 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Lja1g5833 2135 Gene3D C2 domain 2007 2133 IPR035892 -
Lja1g5833 2135 Gene3D - 630 974 IPR011989 -
Lja1g5833 2135 Gene3D - 1001 1151 IPR011989 -
Lja1g5833 2135 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g5833 2135 Pfam C2 domain 2008 2107 IPR000008 -
Lja1g5833 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 14 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lja1g5833 2135 PANTHER - 14 2133 - -
Lja1g5833 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1288 1329 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1747 1790 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1015 1064 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 69 110 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1708 1746 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Lja1g5833 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Lja1g5833 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Lja1g5833 2135 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g5833 2135 Gene3D - 191 367 IPR011989 -
Lja1g5833 2135 SUPERFAMILY ARM repeat 723 1109 IPR016024 -
Lja1g5833 2135 Gene3D - 27 190 IPR011989 -
Lja1g5833 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2111 IPR035892 -
Lja1g5833 2135 Gene3D - 1163 1343 IPR011989 -
Lja1g5833 2135 SUPERFAMILY ARM repeat 44 797 IPR016024 -
Lja1g5833 2135 SMART C2_3c 2008 2104 IPR000008 -
Lja1g5833 2135 Gene3D - 1610 2006 IPR011989 -
Lja1g5833 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5833 Lja-Chr1 104808733 104819591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5833 402 789 U-box Gene Family AT3G46510 21.921 4.60e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5833 - - gmx:100796864 3615.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5833 1 104808733 104819591 Lja1g5833 1 104808733 104819591 ECH