Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5832 ATGGAACATGAAGACAAACAATCTCAATCTCCTGAGAAAACCCCATACACTCAACTTGAGCAAGCTAACTCTGATTTTATGCTAGCAATTGGCTTGCAAGAGCAAGATGGAGCATTCACAGCACTTGCAACATTTGAAAGTGATACTGAGGGTGATTCTTCTTCTGATAATAATGATTATGATAATGATGCTGACTTTTTCCTGAGCCAAGAGTTTGAATCAGACCTTCAGTTTCTTGAGAGTGAAGGAAGCAGTGATGATGTGGAAATGGAAGAAGAAGATGATGATGATGGCATTGATGTGGATGAACTCACTTATGAAGAGTTGATTGAGTTGGGAGATTTTATAGGAAAAGAGAAGAGAGGACTAAGGGCCAACGAAATTGCTTCATGCTTGCACTCTCAAAATTACCATGTGGAAAGCAAAAGTGGTACTACTGATCTTTGTGTAATTTGTCAGGTTGAATATGAAGAAGGTGAAGCCCTGGTGGCACTTCAATGTGACCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATCAAGAAGGTTTGCCCAATTTGCAGCAGTGAAATTTCGGTTCCCAAGAATATGATGAATTAA 606 0.3944 MEHEDKQSQSPEKTPYTQLEQANSDFMLAIGLQEQDGAFTALATFESDTEGDSSSDNNDYDNDADFFLSQEFESDLQFLESEGSSDDVEMEEEDDDDGIDVDELTYEELIELGDFIGKEKRGLRANEIASCLHSQNYHVESKSGTTDLCVICQVEYEEGEALVALQCDHPYHTDCISKWLQIKKVCPICSSEISVPKNMMN* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5832 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 196 IPR013083 -
Lja1g5832 201 MobiDBLite consensus disorder prediction 42 63 - -
Lja1g5832 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 197 IPR045191 GO:0061630
Lja1g5832 201 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Lja1g5832 201 SMART ring_2 149 189 IPR001841 -
Lja1g5832 201 SUPERFAMILY RING/U-box 148 197 - -
Lja1g5832 201 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 4 197 - -
Lja1g5832 201 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g5832 201 Pfam Ring finger domain 148 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5832 Lja-Chr1 104805040 104805700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5832 79 193 C3H Transcription Factor Family AT3G63530 43.220 1.61e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5832 K19045 - gmx:100777284 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5832 1 104805040 104805700 Lja1g5832 1 104805040 104805700 ECH
Lja1g5050 1 71243258 71243857 Lja1g5832 1 104805040 104805700 PCT