Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5828 ATGGAAAAGCAAGTGATTCTCCTTAACCTCCTCATCCTCCTCCTCACACCACTCTTCACCACCTCCACCCACGGCAGCGCCGCCTCCTCCTCCACCTCCTCACCATGCCCCATGGATCTCAGCTACGTCTCAACCTTCCCCTGGGACACCACCACCTGCAGAGGCGACCCAATCGACACAAACCACTGTTGCCAATCCCTCCTCAGCCTCTTCGGCATCGGCATGGCCCAGCACCTCAAAGAAACCTCCATGTTCCAGCTCCGCGACGAGGCCACCGCCTCCGCGTGCCTCTCCGATCTCCAAATCAAGCTCTCTGCGCTCTCAATCCAACCCTCACTGGTCCCTCAGTGCTTCCAAAACTCCACACAGTTCGTCACCAATTCGTCAAACTGCGCAGGGATCAACAACACCCAGGATTGGAAGGAGAAAGTGGGAGCAGTGAGTCCCTTAGATACTGCCTGCAAAGGGGATATGAGTTCACAGACGAGGTGTGGAATTTGCACTGATGCAGGGTTCAAGGTGAATTCTCAGCTTCTTGGGATTGACCCAAATGCTACAAAGTGTTTCTACTATTCAATTTTGTATGCTGGTGGGATTGTCAATGAGTTTGGTCCTACTGATGTTGGAACTGCTGGTTGCATATTGGGTATGCCAATTGCAACAAAAGGGTCATCATCAAATAAGGATCAAGTTTTGAAGCTTGTTTTTGGGTTATTGGGTGCTTTGATTGGTGTTCTTCTTGCATTTTTTCTGATTATTATGTATAGGAAGTGGGATAAGAAGAGAAAGGAGAATAATTTTCATAGGTCAATTGAAAATAGTGTGAGGGAAGCTGTTTTGCCTAATACTGGTGCTAAATGGTTTCATATATCAGAGCTTGAGAGAGCTACTAATAAATTTTCACAGAGGAATATGGTTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGAGTCTTGCAGATGGGGCTTTGATTGCTGTTAAGGAGATTTTTGATTTGGAAACTAGAGGGGATGAGGAGTTTTGCTATGAAGTGGAGATTATTAGCAAAATCAAGCATAGGAATCTTCTTGCTTTGAGGGGTTGTTGTGTCACAAGTGATAATGCTAAAGGTAAGAGGAGGTTTTTGGTTTATGATTACATGCCTAATGGGAGCCTCAGTTATCAATTGTCACTTGTTGGTGCTAATTGTCTAACATGGCCACAGAGGAAGAATATAATCCTTGATGTGGCGAAAGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCGATTTACCACCGCGACATAAAGGCTACCAACATACTCTTGGATTCAAAAATGAAAGCCAAAGTTTCAGATTTTGGGTTGGCTAAACAAGGGAATGAAGGCCAGTCTCATCTTACAACAAGGGTTGCTGGCACCTATGGCTATTTGGCACCAGAGTATGCTCTTTATGGACAACTAACTGATAAAAGTGATGTCTATAGCTTCGGTATTGTGATTCTTGAAGTCATGAGTGGGAGAAAAGTGCTTGACACTATGAATTCACCTGTGGTTTTGATCACGGATTGGGCGTGGTCACTTGCGAAATCGGGGATGGTGGAGGAGATTTTCGACGAGTCGATAAAGAAAGAAGGGCCAGAGAAGATCATGGAGAGGTTTGTTCTTGTCGGCATTCTTTGCGCTCATGCAATGGTCGCGTTAAGGCCTACTATTGCTGAGGCGCTTAAGATGTTAGAAGGGGACATTGACATTCCCAATTTACCAGACAGGCCTGTACCACTTGGTCATGAATCTTTTCAGTCTTCTCTGTTGAGTGGGATGCAAAGTGGAAGAACAACGCCAAATTTTTCATCTTTTTCAACAAGCACGAGCATAGTTTAG 1866 0.4534 MEKQVILLNLLILLLTPLFTTSTHGSAASSSTSSPCPMDLSYVSTFPWDTTTCRGDPIDTNHCCQSLLSLFGIGMAQHLKETSMFQLRDEATASACLSDLQIKLSALSIQPSLVPQCFQNSTQFVTNSSNCAGINNTQDWKEKVGAVSPLDTACKGDMSSQTRCGICTDAGFKVNSQLLGIDPNATKCFYYSILYAGGIVNEFGPTDVGTAGCILGMPIATKGSSSNKDQVLKLVFGLLGALIGVLLAFFLIIMYRKWDKKRKENNFHRSIENSVREAVLPNTGAKWFHISELERATNKFSQRNMVGQGGDGVVYKGSLADGALIAVKEIFDLETRGDEEFCYEVEIISKIKHRNLLALRGCCVTSDNAKGKRRFLVYDYMPNGSLSYQLSLVGANCLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTDKSDVYSFGIVILEVMSGRKVLDTMNSPVVLITDWAWSLAKSGMVEEIFDESIKKEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLSGMQSGRTTPNFSSFSTSTSIV* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5828 621 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 24 602 - -
Lja1g5828 621 ProSiteProfiles Protein kinase domain profile. 300 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5828 621 SMART serkin_6 300 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5828 621 PANTHER OS01G0253100 PROTEIN 24 602 IPR045271 GO:0004714|GO:0006468
Lja1g5828 621 Pfam SPARK 31 188 IPR043891 -
Lja1g5828 621 Gene3D Phosphorylase Kinase; domain 1 260 380 - -
Lja1g5828 621 Pfam Protein kinase domain 302 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5828 621 MobiDBLite consensus disorder prediction 602 621 - -
Lja1g5828 621 Gene3D Transferase(Phosphotransferase) domain 1 381 579 - -
Lja1g5828 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Lja1g5828 621 CDD STKc_IRAK 306 575 - -
Lja1g5828 621 SUPERFAMILY Protein kinase-like (PK-like) 285 589 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5828 Lja-Chr1 104703824 104706013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5828 29 603 Receptor kinase-like Gene Family AT1G11050 52.246 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Lja1g5828 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5828 - - ccaj:109788171 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5828 1 104703824 104706013 Lja1g5828 1 104703824 104706013 ECH