Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5826 ATGTCGAAGCCAAAGCCATTCCACGGCGCGAACGTCTTCATGTCGCGGAACTTGGTGCCGCCGGAAGTCTTCGACGCGCTTCACGACGCCGTCAAAAACAACGGTGCCGAAATCCACCTCTGCTGCGACCCTTCCCGCAACGGCGCCTCCGATTACCACATCATTTCCTGCAGCAAACATGAGAAGTTCGATGATCTTAAATCCAAGGGCTGTAAATTGCTAGGTCCTAGATGTGTTCTTTCTTGTGCTAGAGAACAAAGGCCACTGCCTAAAAAGGGCTTCACTTGTTGCCTTGCTATGGAAGGAGTCAAACTACTTGCCTCTGGCTTTGATGCCGACGAAAAGGTTAAGATAGAAGAGTTAGTGACTGAAATGGGGGGAATTCTACACACAAAAGCGTCACTGGATTTGAACTTTATCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATCCTGAAGAAGCCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCCGGGTTAAGGATTTGTGTAACTGGAATCCCAGCAGATAAGCGCAAAGAGATGGAAAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAACTGACAAAGAATTGCACACATTTGATTTCTAATGCTCCTGAAGGCGACAAATATAAGGTGGCTAAACGTTGGGGCCACATCTGTATAGTGACTAGTAAATGGTTCGATCAATCTATTGCTCGAAGAGCATGTCTAAATGAGGAGTCTTACCCTGTTCAAAGTGGGTCTATATCTTCACTTAAAGTAACTAGGGACTTCACAGTGCAACATAGCCAAGAGAGGGATTTTGGGAACTCACAATCTGTGGCAACCTCAAGAGCTATGGATTCAAATATGCCAGTCTTTTCTGGTGCTGAGTCTATGGATCTAGAAGCTAAACAGTCAGAACATATGTCCTCTTCTTTAAATGCTCCTTTATTTGTTAAAGAGGCAGATCCTGAAGCACCTCCATTACATACCAGTAATGAATTGAACTTTGATGGTGCTGTTGCGAATGATTCTGAATCTGATGATAATGACCTGTACTTATCAGACTGCAGAATATTACTTGTTGGTTTTGAAGCTTCTGAAATGCGGAAATTAGTTAATATGGTGCGTAAAGGTGGAGGATCCCGATATATGTCTTTTAATGACAAGCTGACACACATAGTTGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTAAGGAGCCTTGCTGCTTTGGGTGTCATTCATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAAAAGAAGGAGGTCACTGTTCTTCAGAGACACATCGCAAATGATACACTTCTTCCCAAAGCTAGCACAGCAAAAGGAGCAGTAACACGGATCACGTCCATTAATCAAGGTAAAAGCTCTGGCTTTCATCAAAGCTTGCAGACTGATCAGGTAGTGAATATTATGGAATCTAGAGTAGTAGTGCCAGAATGTTCAAAGAAAAGCAAAGAAGAGAAACCAGATATGGGTATAAGTGCTCTCACATCAAGTAAAGCAAAGGGCAAAACTATGTCGCAAAATCAACCTCCTGATAATAAATTGAAGGTACAAAAGATGACGCAACACGACTCTAGTGTTCTACACGTGAAGACAACAAATGTTTTCAGAGGGAAAACATTTTGTTTCTCAAATCTATTTCCTGAAGAAAGGAGAGCTGAGGTTATTCAATGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGAGAAAACAAGAAAGAGTGTCCACTATACTATTGAGTGTCATGGTGTAACACCCAGGTTGAAAGGTGATCATGAAGGTTGCTATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCCTTGCTGGATGTTGATAGTCACATTCTTTATTCTCCACTTCCCTGCTGTGTTCCGTTGCCTGGGTTTGAAAGCTTCCGATTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTTCTTAGGAACTTGTGTTTTGTTCTAGGAGCTAAATTTGTGGAGAAGTTGACTAAGAAGGTCACCCATTTATTATGTAAATTCACCAATGGGCCCAAGTACGACGCTGCTTGTAAGTGGGGGATCCGATCAGTTACATCTGAATGGATATTTGAATGTGTGAAACAGAATAGAGTTGTTGCCATCGACCAATTTTTACCCAAGGAAGTCACTGCTCAAGACCAAGAGGCAGGAGTTTGCACTGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAGTGACATGCCCTCCCAGTTTCCAAGTCAGTCTCAAAGTTTGGGAAGTGCAGCGAGTAAAAATGTATTTTGTGAAGTTGGGAATCATGGGGCTGATTATACAGCATCAAGTACTTCTAGCAAAAGGGCTAGGCATGATAAGGTGCCTTCTGCTATAAATTCAGGTACTCATGTCAATGACATGAACAATACTGAAGAAAATTTGGTTAAAGATGCAGGGGAGATTTCTCATGCTGTTCCTGATGTTGCTTCTGCAATTGAGGACTTGTTAGAGCAGACAAGTAAGATACATGATCAGAGGCCTCCAGAGAGTACTGGGTGTGAACGAAGTATATACTCATCTGATTGTCCAGTCCTTGGTGAAGACAATTCAAATCCTCATACTACCTTTGGGTTATCTAAACACTCGCTAAACAGAAAAGATGACAAGGGTGAGGCATCTGAAGACAGAAGAAGAGCAGGAATATATGATGGCTTTAGTGAAACACAAACAGACTCTCAGGTTGTTAGTTATGAAGAAGATTTGTCAGGAAGGCAAATGCTTATAGAGAGAGTCCGAATTCGAAGTAGCATGCCCTCAAGTACCATGAAGGAAGATTTCAGTTGA 2934 0.4182 MSKPKPFHGANVFMSRNLVPPEVFDALHDAVKNNGAEIHLCCDPSRNGASDYHIISCSKHEKFDDLKSKGCKLLGPRCVLSCAREQRPLPKKGFTCCLAMEGVKLLASGFDADEKVKIEELVTEMGGILHTKASLDLNFIIVKNVLAAKYKWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLRICVTGIPADKRKEMEKLILQNGGKYSAELTKNCTHLISNAPEGDKYKVAKRWGHICIVTSKWFDQSIARRACLNEESYPVQSGSISSLKVTRDFTVQHSQERDFGNSQSVATSRAMDSNMPVFSGAESMDLEAKQSEHMSSSLNAPLFVKEADPEAPPLHTSNELNFDGAVANDSESDDNDLYLSDCRILLVGFEASEMRKLVNMVRKGGGSRYMSFNDKLTHIVVGNPTEMEKKDVRSLAALGVIHVVKTSWLEDCDREKKEVTVLQRHIANDTLLPKASTAKGAVTRITSINQGKSSGFHQSLQTDQVVNIMESRVVVPECSKKSKEEKPDMGISALTSSKAKGKTMSQNQPPDNKLKVQKMTQHDSSVLHVKTTNVFRGKTFCFSNLFPEERRAEVIQWISQGGGEIISEKTRKSVHYTIECHGVTPRLKGDHEGCYISSHWIRSCLEDGSLLDVDSHILYSPLPCCVPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFTNGPKYDAACKWGIRSVTSEWIFECVKQNRVVAIDQFLPKEVTAQDQEAGVCTVSQFPTQAVRMISDMPSQFPSQSQSLGSAASKNVFCEVGNHGADYTASSTSSKRARHDKVPSAINSGTHVNDMNNTEENLVKDAGEISHAVPDVASAIEDLLEQTSKIHDQRPPESTGCERSIYSSDCPVLGEDNSNPHTTFGLSKHSLNRKDDKGEASEDRRRAGIYDGFSETQTDSQVVSYEEDLSGRQMLIERVRIRSSMPSSTMKEDFS* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5826 977 CDD BRCT_TopBP1_rpt3 369 453 - -
Lja1g5826 977 SUPERFAMILY BRCT domain 569 656 IPR036420 -
Lja1g5826 977 Gene3D BRCT domain 31 94 IPR036420 -
Lja1g5826 977 ProSiteProfiles BRCT domain profile. 370 462 IPR001357 -
Lja1g5826 977 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Lja1g5826 977 MobiDBLite consensus disorder prediction 894 909 - -
Lja1g5826 977 SUPERFAMILY BRCT domain 632 751 IPR036420 -
Lja1g5826 977 Gene3D BRCT domain 360 458 IPR036420 -
Lja1g5826 977 CDD BRCT 103 170 - -
Lja1g5826 977 Pfam twin BRCT domain 190 253 IPR001357 -
Lja1g5826 977 Pfam twin BRCT domain 671 732 IPR001357 -
Lja1g5826 977 ProSiteProfiles BRCT domain profile. 566 654 IPR001357 -
Lja1g5826 977 ProSiteProfiles BRCT domain profile. 667 750 IPR001357 -
Lja1g5826 977 MobiDBLite consensus disorder prediction 894 947 - -
Lja1g5826 977 Gene3D BRCT domain 187 273 IPR036420 -
Lja1g5826 977 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Lja1g5826 977 Pfam BRCT domain, a BRCA1 C-terminus domain 568 651 IPR001357 -
Lja1g5826 977 MobiDBLite consensus disorder prediction 910 932 - -
Lja1g5826 977 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Lja1g5826 977 Gene3D BRCT domain 564 660 IPR036420 -
Lja1g5826 977 CDD BRCT_TopBP1_rpt2_like 665 740 - -
Lja1g5826 977 Gene3D BRCT domain 661 755 IPR036420 -
Lja1g5826 977 SUPERFAMILY BRCT domain 370 453 IPR036420 -
Lja1g5826 977 Pfam BRCA1 C Terminus (BRCT) domain 372 448 IPR001357 -
Lja1g5826 977 Pfam BRCA1 C Terminus (BRCT) domain 104 170 IPR001357 -
Lja1g5826 977 Gene3D BRCT domain 98 186 IPR036420 -
Lja1g5826 977 SMART BRCT_7 4 86 IPR001357 -
Lja1g5826 977 SMART BRCT_7 97 174 IPR001357 -
Lja1g5826 977 SMART BRCT_7 372 452 IPR001357 -
Lja1g5826 977 SMART BRCT_7 184 261 IPR001357 -
Lja1g5826 977 SMART BRCT_7 568 644 IPR001357 -
Lja1g5826 977 SMART BRCT_7 664 740 IPR001357 -
Lja1g5826 977 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Lja1g5826 977 SUPERFAMILY BRCT domain 186 272 IPR036420 -
Lja1g5826 977 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 956 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5826 1 967 Core DNA Replication Machinery Family AT1G77320 49.222 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5826 K10728 - gmx:100804966 1408.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5826 1 104671670 104682904 Lja1g5826 1 104671670 104682904 ECH