Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5813 ATGCCGCAAACCTCCACCCACGGTGGCCGGACGGTGGTGGTGGGTGTCAAGATGGAACCTCACAGCACAGAATTGCTCACGTGGGCTCTGTTCAAAGTAGCTCAGCCTGGTGATGTTGTGGTTGCTCTTCACGTTCTTGGGAATGATGAAATTGTGAATCGAGATGGGAAATCTTCTCTGTTTTCGCTTGTCAAAGCATTTGACTCTGTTCTAGCTGTTTATGAAGGATTCTGCAGTTTGAAACAGGTTGAGCTGAAGCTGAAAATTTGCAGGGGTTCATCAGTGAGGAAAATTCTTGTTCGAGAAGCAAATGCTTATTCTGCAACTCATGTAATAGTTGGAACTCCACAAGGTCTTAGTAAAATTCGACCATCGATTTCGGTGGCTAAGTACTGTGCTAAGAAGTTATCAAAAGATTGTTGGGTGCTTGCTGTTAATAATGGGAAACTTGTGTTCAAGCGAGATGGCTCACCAGCTGTTTGTGCTATTGACTTAAAAGGAACGGATCGGGATCGCAGAAATGGGTTGCTCGGTTCGATTAACTGGACACTCGGCAAGAGTTCAAAGGTACTAAATGATGACGGCGAAGGGATACGTGGAAAGGGTGAGATTTTCTCAGATCAAAGCTTGGCTAAGGTTTTTATGGATACGTCAGAAGCCAAAGGGAGGAAAAGCTGCTTCAATTGTGCTTCAACATGGCACCAATCTGGAGAAGAGTCTTGTGGTGATGGTGATAATGAGAACCCTTTGGCTATAGTTCCTGTGAAGGCCAATGATGTTGTGTCTAGCACAACAACTTTACATGGCAGAGAAGTAGCTGCATTGAAACCAGGTTGGCCACTACTACGCCGGACAGTTTTACCAGACCGGCAATCTGCGGAAAGATCATGGTTGCGCCAGATCTCGGTGGTTCAGTGGGCAATGAGCTTGCCCTCTAGAAATTTTTCGTATGCTGCTGCAGATCATGATCATAGAACCAAGAATTGTGTCCGGGGTCAAGGTCAATTTTTGGATCTGGATAGCAAAAGTGGCGCGCTTGTTCCTGTGGATGCTGAAATCGGTGTTGCTTCTTCACCTGAACGCAATTCGAGAAGCGTTCCTAAGGAATTAGAGGGTCTTCATGAGAAATACTCATCCACTTGCAGATTGTTCAAGTACCAAGAGCTTCTATCAGCAACATCAAATTTCTTGCCTGAAAACTTGATTGGAAAAGGGGGAAGTAGTCAGGTTTACAGAGGCTTTCTTCCTGATGGCAAGGAACTTGCTGTTAAGATATTAAAGCCTTCTGATGATGTTTTGAAGGAGTTTGTTCTAGAAATAGAAATCATTACCACCTTGCATCACAAAAACATTATTTCCCTCCTTGGGTTCTGCTTTGAGGATGGAAATCTTCTTTTGGTCTACGATTTCTTATCACGAGGAAGCCTTGAAGAGAACCTTCATGGTAATCAGAAAAATCCACTTGTGTTCAGTTGGACCGAGAGATACAAGGTAGCCATCGGTGTTGCTGAGGCTTTGGAATATCTGCACAACAATGATGGCCAACCTGTGATCCATCGCGATGTGAAATCATCAAATATATTATTATCTGAGGATTTTGAACCCCAGCTTTCTGACTTTGGACTTGCTAAGTGGGCATCAACCTCATCGTCACATATAACCTGCACAGATGTTGCCGGAACCTTTGGTTACTTGGCTCCTGAGTACTTCATGTATGGTAAAGTAAACGATAAGATTGATGTCTACGCATTCGGGGTCGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCAATAAGTGGGGATTATCCCAAAGGGCAAGAGAGCCTTGTCATGTGGGCAAGTCCAATTCTGAACAGTGGGAAGGTTTCACAGTTGTTCGATCCTAGTTTGGGTGATAGCTATGATCATGACGAGATGGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAGACGTGCACCAAGAGCTAGGCCTCAAATGAGCCTTATCAAAAAGCTCCTTGAAGGTGATGCTGATGTGATCAAGTGGGCAAGGCTAGAAGTTAACGCTTCGGAAGCATCTGAAAAGTTTGATGAAGAAGCTTTTCCATCTCCTAATCTGCAGTCACATCTGAATCTTGCACTGCTTGATGTGGAGGATGACTCACTCTCCATGTGCAGTGTTGATCAGAATGTTTCCTTAGAGGACTACTTGAGAGGCAGGTGGAGCCGCTCATCAAGCTTTGATTGA 2229 0.4455 MPQTSTHGGRTVVVGVKMEPHSTELLTWALFKVAQPGDVVVALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCSLKQVELKLKICRGSSVRKILVREANAYSATHVIVGTPQGLSKIRPSISVAKYCAKKLSKDCWVLAVNNGKLVFKRDGSPAVCAIDLKGTDRDRRNGLLGSINWTLGKSSKVLNDDGEGIRGKGEIFSDQSLAKVFMDTSEAKGRKSCFNCASTWHQSGEESCGDGDNENPLAIVPVKANDVVSSTTTLHGREVAALKPGWPLLRRTVLPDRQSAERSWLRQISVVQWAMSLPSRNFSYAAADHDHRTKNCVRGQGQFLDLDSKSGALVPVDAEIGVASSPERNSRSVPKELEGLHEKYSSTCRLFKYQELLSATSNFLPENLIGKGGSSQVYRGFLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLHGNQKNPLVFSWTERYKVAIGVAEALEYLHNNDGQPVIHRDVKSSNILLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKVSQLFDPSLGDSYDHDEMERMVLAATLCIRRAPRARPQMSLIKKLLEGDADVIKWARLEVNASEASEKFDEEAFPSPNLQSHLNLALLDVEDDSLSMCSVDQNVSLEDYLRGRWSRSSSFD* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5813 742 CDD USP_Like 11 142 - -
Lja1g5813 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Lja1g5813 742 CDD STKc_IRAK 402 669 - -
Lja1g5813 742 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Lja1g5813 742 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 8 736 - -
Lja1g5813 742 PANTHER OS01G0253100 PROTEIN 8 736 IPR045271 GO:0004714|GO:0006468
Lja1g5813 742 Pfam Universal stress protein family 10 142 IPR006016 -
Lja1g5813 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 142 - -
Lja1g5813 742 SUPERFAMILY Protein kinase-like (PK-like) 377 670 IPR011009 -
Lja1g5813 742 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5813 742 Pfam Protein kinase domain 400 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5813 742 ProSiteProfiles Protein kinase domain profile. 396 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5813 742 Gene3D Phosphorylase Kinase; domain 1 359 470 - -
Lja1g5813 742 Gene3D Transferase(Phosphotransferase) domain 1 471 682 - -
Lja1g5813 742 Gene3D HUPs 9 147 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5813 Lja-Chr1 103982213 103986464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5813 383 666 Trihelix Transcription Factor Family AT1G68690 45.675 1.06e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja1g5813 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5813 - - aprc:113846853 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5813 1 103982213 103986464 Lja1g5813 1 103982213 103986464 ECH
Lja1g5813 1 103982213 103986464 Lja1g4482 1 58322687 58326461 PCT