Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5812 ATGGGTCGCGCCAAAGCAGTCATGAAGCGAATTCAAGATAACAGAGTTCGTAAAACAACGTTCTTGCACAGAAGAAAGGGGCTAATCAAGAAAATGTCTGATTTTTCCACCATTTGTGATTCTCAATCCAATGCGTGCCTCATTGTGTATGATCATGATGGCGGTGATGATTCTACACCAGTGATTTGGCCTCAAAACCCTACAGTGGTACACTCGGTTCTTGAAAAGTATGAGTGCGAGAAGAATAACAAGACTACTCCTGTGAAGAAATTCGATCTTGAAGAATTTTTTGAGATAAAGAAGAAGAGTGTTGAAGATGAGATTGCCAAAGTGAAGAAAGAGATCATCAATCTCAAGTTTCCAACTTGGGACCCGATTTTTCTCAGTCTTGGAAAAGAGAAGTTGAGGCCACTCATTGCTGAGTTGGATGCTAAGATCAGTGCTTGTGATCAGAGGGTTAACTTGTTGAAGAGCATGCAAGAAAGTGAAGTGATCAACTTAAGTTACAAGGCAAACATGGTTGAAGTGGAAGACATCTCTGAACCCCAAGTTATCTCTGCTCCTATTAGTCCAGTGATTGATGGAATGGTGGATTCTACTGATCAAGTTAATGGGCCTTTGGATTGTACAAATCAAGTTATTGAGCCAGTGGATTCAGATAGTGGGCTTGAGGAGTGGGCTTGCAAATTTCTTGAGAGTTGTTATTGGGCTGATCAACAAGGTGAACCAGAGGAATCTACTGATCAAGGGCCTTTGGATTGTACAGATCAAGTTATTGATGAAATGGTGGATTCTACTGATCAATTTAATGGTCCTTTGGATTGTACAAATCAAGTTTTTGAGCCAGTGGATTCGGCTAGTGGAGCAGTTATTGATGATAATAGTGGAATGGTGGATCCTAATGTGCCTTTAGATTGTACAGATGAAGTTTTTGAGCCAGTGGATTCGGATAGTGGGCTTGAGGAGTGGGCTTGCAAGTTTCTTGAGAGTGATTATTGGGGTAATCAACAAGGTGAACCAGTGGATTCGGCTAGCGGGCTTGAGGATTGGGCTTGTAAATTTCCTCAGAGGGCTAATCAACAAGGTGGTGATTTTCTGTGGTGGTTTGATGAATCTGATGAAGATCTTTTCCAGAATACTCCTTTTCAGTTGCAGGATCAATGA 1164 0.4149 MGRAKAVMKRIQDNRVRKTTFLHRRKGLIKKMSDFSTICDSQSNACLIVYDHDGGDDSTPVIWPQNPTVVHSVLEKYECEKNNKTTPVKKFDLEEFFEIKKKSVEDEIAKVKKEIINLKFPTWDPIFLSLGKEKLRPLIAELDAKISACDQRVNLLKSMQESEVINLSYKANMVEVEDISEPQVISAPISPVIDGMVDSTDQVNGPLDCTNQVIEPVDSDSGLEEWACKFLESCYWADQQGEPEESTDQGPLDCTDQVIDEMVDSTDQFNGPLDCTNQVFEPVDSASGAVIDDNSGMVDPNVPLDCTDEVFEPVDSDSGLEEWACKFLESDYWGNQQGEPVDSASGLEDWACKFPQRANQQGGDFLWWFDESDEDLFQNTPFQLQDQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5812 387 PANTHER MADS BOX PROTEIN 3 291 - -
Lja1g5812 387 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Lja1g5812 387 SMART madsneu2 1 65 IPR002100 GO:0003677|GO:0046983
Lja1g5812 387 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Lja1g5812 387 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja1g5812 387 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Lja1g5812 387 Coils Coil 94 114 - -
Lja1g5812 387 ProSiteProfiles MADS-box domain profile. 1 42 IPR002100 GO:0003677|GO:0046983
Lja1g5812 387 PANTHER PROTEIN, PUTATIVE-RELATED 3 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5812 Lja-Chr1 103980527 103981690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5812 1 152 Type I MADS-box Gene Family AT5G55690 30.968 8.28e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g5812 SRF-TF 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5812 - - lja:Lj1g3v0268770.1 743.806