Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5811 ATGGACCAACACTACCCCCGCGACCGCCACTACCACCACCACCACCAACACCAACAACAACATCCCCAACAGCACCGTACTAGATACGCTCCTCTTGGTCCTCAATCTCACCACCACCTCTCTCAGCCTCCTCCCCCTCTTCCTCCTCCACATGCTCCGCCGCCACCGCCTCATCCTCCCCCCCTCTCCTACCGCAACATCCACACCCCTCCTCCTCCCCCTCTCTACAACACTCCTCCCGTCCACCCATCCCGACAATTACAATTCTACCCTCACCACCGTTCCGCCCCAGAGGAACGCCCAGTCCCAACCAACCACCCCTTCTCCGACGACCTCCTCCCCCGCCGCAATATCCCTGATTATGACCGCCGCAACCCTGAACCCGCCTGGAACCCTAGCCTCGATGATCTCAATTACCCTCCCCTTGATTACGACCGCGAATTCAACCACCACCGACCACAGCAGCCTCCACCACCACCGCCGTCATATCCACCTGTTGACAGCCTCCGGTACGACGCCTCTGATGGAGCCAATTGCAGGTTGAGGACGGAACGCCTCGACGGAAACCCTAGGGAAGGAGGCTACGCCTGGGGCAGAGAAGGCGAGGGCAGCGGCAAGTACCGCCGCTCCGTCGTGGAGGTGCCGATTTCGAGGGATGCCGACGTTGATTCAAAATCCAGCGGTGGCTACAGTCGCGATCGCGTCTACGACGATTCTGATGTGCCTACCAGGGTTGGCAGGGTCGAGAACAGTAGAAGGTGGGCGATGAATGAAAGAAAGGTACCTAGAGAGTTTCATGATTCTTTTGAATTGGTGAATGGTGAGATGAAAAGAGAGTATTCTGAAATGGGTAGGTATAGTAATAACAGCAACAATAGTAGTAGTAATTCCAGAGGAGGGAACAGCAGAGAGCGTGGTAGTGAAACATTCAATCGCACTCCGCCGAAGAAACAGATACAGAAGAAGAGTGCACTTCTCAGAATCCAGACAGTAAAGCCCAACAATCATAGGAACCGAGATGTCGAACAGTTACGTTATGCTGGCTATGCTTCTCCGGATTCGAACTCTAGTTATTTCAGGGGTAAGGAGCAACATAATGGGTATTCAGGTGGTGGTCATGGAATGAGGGTGGAAGAGAGGGAAGGTAGCCCAGTTGAGCTTGATATTTCTTTCGAATCGAACTCCCTGGTGGCCAAGGCTATTGTCTCCGCTGCCCCTTCCGCTGCTCCTGTTCCTGATTTGAATGTGAATGCCACTCATGTTTCTGATGCAGATTTGGCTTCTGTGGAAAAGGATAAGAAGGTTTCGGTGTCTGATGGTGATTCTGGTTTGCAACCTGGTAGAGTAACTACTGGTGCTGCGGATTTAATTAGCCTGCCGTGCAAACAAAGTGACACCTCTAGTGCTGGTAAGGAATTGAACCTGCATAAGAATGTCCCTGATACTTCTTCTCAGCCTTGTACTGATGTGATTGGTAAACCTGATGGGAAAAATGGGGTGGTAGTTTCAGTTGCAAGTGCCAATATTTGTAGGGTTAAACCGTCCTCTAGGGTTGTCAAGAAGAAAAAAGTTGTTAAAAGAGTGGTGAAGAAAGCTGTTGTAAATCCTAATTCAACTGTGTCAAGTTCGCTGCCAGCGAATGCTCCTAATGGAACTCTGAAAACTGATAGTGTAACACTTGGTTCCTCAACTGCCTCGGGTCCTGACAAAACTGAAACCTTTTTGGAGGGGAGAGGCACCGCTTTTGACAAGGTCTCTGTACCGGACTGTTTGTACCCTTTACTGAACGAAGAGAATGAATTGAATGAAGATAAAAAGGGAGATCTATCATCATTGCTGAGTTTGGGGCCAGATTCCAGGTCACATGAATGTAAGACTGAGCAACATTTTGATATTGGGAAAGTATCCAGGTTTGAAAGAGGTGGAGGCATTTCAAATTCTCCATCTTGTGCTTCTATTAGTGAGGATAAAAAGAGTGATTCTGATTGTTTAGATGCTAATAATTCTGCCCATGACTTGCATGGCATGCCAAATACTGATATGGTTACTATTTCGTTAAGTCGAAGTACTTCTTCTGAAATCAATTACATAGATTATGATAATAAGCAATTATGTCAGAGTGAAGTGTCTCTATCACATGGTAAATATTCAAATGTAGGAAGTCCACAGAATAGGAATCTTGTAGTTGTAGGGGATGAAAGGGATTGCAAATTGTTTAGTTCAGCTGACAGTGTCATTTCCACAGACCTAATAGATGCACATAAGTCTGCCAACAACAGGGTTTATGGCTTCAATTCCAATGATCTTACAATTTCAGAAGAAAAAAATACTATTAGTGAAAGTGGGAATTATGACACTTTTGGTAATGTAAATTGTGGAAATATGGCCCCTACAATCACTAAGAATGCTAGTTTGACACAAAATTCAGATACAGCCATTCCTCTGCAAAGCAGCGGAATGGCTGCTTGTTCAAATTCAGGAAATACTAGGATTCAGGATAGTCTAGATTGCCTACAACATGCCAGTGCACTGAAACAGGGTTCTGATAATGGATCATCTAATTTAGGAGATAGTATCACTGTTCACAATTTTGGTATCATGAAAGATGATCAAAAGCAGATGTCCCCCAGTGATGTCACCATATCCCCTAAAAATTGTGACACAGAAAAAACATTCCGGTGTTCTAATACTTCAGTTGGATCAGATGAATGGGATGCACATAGGATTAAAATGGGAAAAGTTACAACTCATAAGTTTTTGAACTCAAAGATGGAGGACATGCTTCCAGACCGTGTTAATCCACATAAAAATGCATGTGATGTGGATAGTAGCTCAAGTATGTTATTGAAAGATCCATCTCTTCCACAAGCTTTAGATCAATCTGTTCAAAGCTTAGATCTTAACTTATCCAGCATGGATGGTGTCGCTATTTTACGTGGGAAAAGAGGGGTTTCAGAAACTGAATTGTATGGTGGAAACTATAATGACAAGGATGATGTAAATAAGGCCTCACCAGTGTCTAAAAGGAAAAAAGTTGCTGATAGTCCTCCAAAGTTCACTGAATGTCAATCTGAATTCAGTGATGCAGGTTTTGCTACCACGTCTAATGCAAGAGTTCCTATCAGTTTCCGTAATAACCAAACACGTCAAAAAGAAGTTGCATTGTCAAGCATGAGTATTCTTTCTACTGCTCAGACAATGCCTTATTCGGAGCATGTTGCTAATTTGTCAGACAGTATTCTGGCTAGAGGACCTTTTGAATCTATGGATGCAAGTAGGGAAACCATGAGTTCTGAGTCTCCGGGATTGCAGCATTCAGATATTGTCTCTTCTTCACCATGTGCAGACTCGGCCTTTCCCAATGCTGAGTTCCCAGTATTGGAATGTGAGCAGAAAGAAATTATCAATCCAATCGTTCCTATAGGTAATAATCAAACTGACATTTTGGTTATTGGAGAAGTCAAGGGAGAAAAAGCTGATTTACAGGCGGTTAAAGGTAGTTACGGTTTTAGAGACTTAGTGCAAAGGTCTCCAACGGCTGATATGGAATCTAATGATCTCAATATGAATGATGATTTACTTGTTCAGCAGAACCTTATGTCCTACCCAGCTGATGGTGGTCGAGTCACTACCAGTAATTCAAATGATGACTTGATTGAGGACTTTCCCAATGCTACATCAGACATGTTTTCTAAAGGGATGACATCTGAAGTACTGGATAGAAAGACTCAAGAGTTTACAGAAACTCACAAAGAAAACAGTCGTGGGTACAAAGAAAATCCAAATAGCAAATCTGTGGTTGAACATGATTCTGACTTAAATACTTCATTAACACAGCACACTAAAGAAAATTTGAAGTCAGATCATGCAATTGGACGTGACCCGATAATGAAGAATATAATGCCAGAACCATCCAAAGTTTATTCCAAGGTTACAACTCAGGGTCTAAAAACATATTGTTCAGAATTAAATGGGAGCAAAAGTCAGCCAGGTGTCACTCTGAAACCTTTCCAGGGTCATTCTTTCACCATTTCGAAGTCAAAGACAAAGGCATCTGCCTCTTCAGCCCCTATTTCAAAACCTCGAACTTGGCACCGTACAGGTAATAATCCTACCACTTCTTTACCTAGGATTAAACCTTCGCCAGGAACAGCTCCTCCCAAAAGGCCAATTCTACCACGAAAAGCGAACTTTCAAAATACCTCTACTTCATACATTCGTAAAGGTAACAACAGTCTTGTGAGGCAACCTTCTCCAGTTTCTGCTTTACCTCAAATCTCCTCTGCTAATCAGTCACCCGCCAGATCTGAAAGCAGGGCCGATGTGACAGATCAATCGATCTACATGAAAACAGGAGAAACATATGCTCCTCAGCATAGGCAGAGAACCCCTTCACTACCTATTGACAATAAACCAAAGGAAAATATATCTTCTCCATTGGTAGACCCTCCTTCCAGTGGTTTGTGTGAAAATTTATCATATCCTGGTAAATCTATAGAAGCTAATGATGCACCAAAGTCTTCTGAAGATTCGCTGATGCATGTTGAAACTTCTGAAAATCCTACTAGTTCATCTAATATTGGGGAGAGTCAAGTTGAAGCAAATGATGGGAATATTTCTTCTATGAATACAAGGAGAATAGTGTATATAAAGCCTAAAACGAATCAGTTGGTTGCAACTTCAAATTCTTGTGATATTGTCTCAACTGATGAAAAGGGCCAAACAGCCTGTTCTGATGGCTACTTCAAAAGGAGCAAAAATCAATTGGTTAGGACTACATTTGAAAATCATATTAACCAGACAATTGCAACGCCCAATAGCAATGTGAATTCTGACGGGCGAGAGGCTAGTAAGGTTCTTTGCAACAGGAGGTTCATTAAGAGGCGTTCACATAAGGTTTCTAGGAGTTCTGGCAAACCCTTAAAAGCTTCATTTGTGTGGACACTTCGTGGCAAGAATTCGTCCGGAAATGATGGGGACTCGTTGCATTATCACAAGGTTTTACCTCGCTTGTTTCCATGGAAAAGAACAACATATTTAAGAAGCTTCGTTCATAATTCTGCTTCAAGCTTTGATAGTAGTTCCGTATCTGCAATCAGCAAGAAATTGCTACTTTCAAGAAAGAGGGATACTGTTTACACCAGGTCAACCCATGGGTTTTCTCTTTGGAAATCCAAGGTATTAGGAGTTGGTGGTTATAGTTTAAAATGGTCCAAATCCATTGAGAAGCACTCAAAGAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAGGAAGAAGAGAGAACAGAAAGATGAGGCTTGCATCAATTCTCAGACTAAGAGTAGGAAGCATTTCTTTCCATCAGTGTTTGTCACATCAAAATGCCAAAGACTTTGTTTTCTTGCTATTAAACCTTACTTATTCTCTCTGTATATATTATATTTGTCTGTTACTCTGACTTTGGAAGTAGCGGTTGATTGTGTAGGAGAACGAATATTTCGTATTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGACGATGAATCCCCGTCCTCTGCCTCTGTCTCTTCAGGTTTGGCTGGCAAAAGAGCTTATATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGAATCGGCAATGGAAACAAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCTAATGAAAAGGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTCACAAGGTTTGGCAAATGTAACAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCCTCAAAAGTTGCTGTCTGTACTAAGTTCCTGAATGGCTTATGTTCTACTCCCAACTGCAAATTGACTCATAAGGTCATTCCAGAGCGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCAAACAGAAATTGCCCGTATAGACATGTCAATGTGAACCCTAAGGCATCTATCTGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGCAATGAGTGTCGGAAGAAGCATAGCTACATCTGTCCTGCTTTTGAAGCTACGGGAACCTGTGTTCAAGGAACCAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGATCAGAACAGTAGAGGGCGTTACTTTGGTTCTATTTCCGTCGATGTTTCTGAACCTGAGATGATGATGGCTTCAAGTCAACAGAACCTTGACCTTGAGAAAGAACTTTCCGACTATATCAGTCTTAATGTGAATGAAGAAGTTGCAGATGTGGTCGATCAATCATTTGAGCAATCAACATTTTGTGGCAATGACTCCATGGATTTGGATACTTATGATGAACTTAAACCAGTTCTTGCAATGACCAAATTGACATCGCAAGCACCTCAGTCCAGTTGTCTGCAAGCTTTAGACAATTGA 6486 0.4286 MDQHYPRDRHYHHHHQHQQQHPQQHRTRYAPLGPQSHHHLSQPPPPLPPPHAPPPPPHPPPLSYRNIHTPPPPPLYNTPPVHPSRQLQFYPHHRSAPEERPVPTNHPFSDDLLPRRNIPDYDRRNPEPAWNPSLDDLNYPPLDYDREFNHHRPQQPPPPPPSYPPVDSLRYDASDGANCRLRTERLDGNPREGGYAWGREGEGSGKYRRSVVEVPISRDADVDSKSSGGYSRDRVYDDSDVPTRVGRVENSRRWAMNERKVPREFHDSFELVNGEMKREYSEMGRYSNNSNNSSSNSRGGNSRERGSETFNRTPPKKQIQKKSALLRIQTVKPNNHRNRDVEQLRYAGYASPDSNSSYFRGKEQHNGYSGGGHGMRVEEREGSPVELDISFESNSLVAKAIVSAAPSAAPVPDLNVNATHVSDADLASVEKDKKVSVSDGDSGLQPGRVTTGAADLISLPCKQSDTSSAGKELNLHKNVPDTSSQPCTDVIGKPDGKNGVVVSVASANICRVKPSSRVVKKKKVVKRVVKKAVVNPNSTVSSSLPANAPNGTLKTDSVTLGSSTASGPDKTETFLEGRGTAFDKVSVPDCLYPLLNEENELNEDKKGDLSSLLSLGPDSRSHECKTEQHFDIGKVSRFERGGGISNSPSCASISEDKKSDSDCLDANNSAHDLHGMPNTDMVTISLSRSTSSEINYIDYDNKQLCQSEVSLSHGKYSNVGSPQNRNLVVVGDERDCKLFSSADSVISTDLIDAHKSANNRVYGFNSNDLTISEEKNTISESGNYDTFGNVNCGNMAPTITKNASLTQNSDTAIPLQSSGMAACSNSGNTRIQDSLDCLQHASALKQGSDNGSSNLGDSITVHNFGIMKDDQKQMSPSDVTISPKNCDTEKTFRCSNTSVGSDEWDAHRIKMGKVTTHKFLNSKMEDMLPDRVNPHKNACDVDSSSSMLLKDPSLPQALDQSVQSLDLNLSSMDGVAILRGKRGVSETELYGGNYNDKDDVNKASPVSKRKKVADSPPKFTECQSEFSDAGFATTSNARVPISFRNNQTRQKEVALSSMSILSTAQTMPYSEHVANLSDSILARGPFESMDASRETMSSESPGLQHSDIVSSSPCADSAFPNAEFPVLECEQKEIINPIVPIGNNQTDILVIGEVKGEKADLQAVKGSYGFRDLVQRSPTADMESNDLNMNDDLLVQQNLMSYPADGGRVTTSNSNDDLIEDFPNATSDMFSKGMTSEVLDRKTQEFTETHKENSRGYKENPNSKSVVEHDSDLNTSLTQHTKENLKSDHAIGRDPIMKNIMPEPSKVYSKVTTQGLKTYCSELNGSKSQPGVTLKPFQGHSFTISKSKTKASASSAPISKPRTWHRTGNNPTTSLPRIKPSPGTAPPKRPILPRKANFQNTSTSYIRKGNNSLVRQPSPVSALPQISSANQSPARSESRADVTDQSIYMKTGETYAPQHRQRTPSLPIDNKPKENISSPLVDPPSSGLCENLSYPGKSIEANDAPKSSEDSLMHVETSENPTSSSNIGESQVEANDGNISSMNTRRIVYIKPKTNQLVATSNSCDIVSTDEKGQTACSDGYFKRSKNQLVRTTFENHINQTIATPNSNVNSDGREASKVLCNRRFIKRRSHKVSRSSGKPLKASFVWTLRGKNSSGNDGDSLHYHKVLPRLFPWKRTTYLRSFVHNSASSFDSSSVSAISKKLLLSRKRDTVYTRSTHGFSLWKSKVLGVGGYSLKWSKSIEKHSKKANEEATLAVAAVERKKREQKDEACINSQTKSRKHFFPSVFVTSKCQRLCFLAIKPYLFSLYILYLSVTLTLEVAVDCVGERIFRIGSVRYRMDPSRRTLQRISDDESPSSASVSSGLAGKRAYIPRRLVIGNDEYVRIGNGNKLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKVAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYICPAFEATGTCVQGTKCKLHHPKKQSKGKKRKRSGDQNSRGRYFGSISVDVSEPEMMMASSQQNLDLEKELSDYISLNVNEEVADVVDQSFEQSTFCGNDSMDLDTYDELKPVLAMTKLTSQAPQSSCLQALDN* 2162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5811 2161 MobiDBLite consensus disorder prediction 38 80 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1244 1266 - -
Lja1g5811 2161 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3 375 2143 - -
Lja1g5811 2161 ProSiteProfiles Zinc finger C3H1-type profile. 1974 2000 IPR000571 GO:0046872
Lja1g5811 2161 MobiDBLite consensus disorder prediction 283 324 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 540 570 - -
Lja1g5811 2161 SUPERFAMILY beta-sandwich domain of Sec23/24 15 1001 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 2049 2063 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 8 22 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1395 1472 - -
Lja1g5811 2161 Gene3D - 1946 2000 - -
Lja1g5811 2161 ProSiteProfiles Zinc finger C3H1-type profile. 2001 2028 IPR000571 GO:0046872
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1 243 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1001 1016 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1091 1111 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 603 627 - -
Lja1g5811 2161 ProSiteProfiles Zinc finger C3H1-type profile. 1919 1948 IPR000571 GO:0046872
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1244 1268 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 281 324 - -
Lja1g5811 2161 SMART c3hfinal6 2028 2050 IPR000571 GO:0046872
Lja1g5811 2161 SMART c3hfinal6 1919 1947 IPR000571 GO:0046872
Lja1g5811 2161 SMART c3hfinal6 2001 2027 IPR000571 GO:0046872
Lja1g5811 2161 SMART c3hfinal6 1974 1999 IPR000571 GO:0046872
Lja1g5811 2161 SMART c3hfinal6 1948 1972 IPR000571 GO:0046872
Lja1g5811 2161 MobiDBLite consensus disorder prediction 2049 2071 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 540 572 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 202 243 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1514 1536 - -
Lja1g5811 2161 Gene3D - 2001 2064 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1345 1379 - -
Lja1g5811 2161 PANTHER CCCH ZINGC FINGER 375 2143 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1345 1536 - -
Lja1g5811 2161 MobiDBLite consensus disorder prediction 1000 1019 - -
Lja1g5811 2161 Coils Coil 1749 1769 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5811 1925 2054 C2H2 Transcription Factor Family AT2G32930 31.618 9.64e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5811 - - lja:Lj1g3v0268620.1 4050.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5811 1 103944479 103956391 Lja1g5811 1 103944479 103956391 ECH