Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5806 ATGTGTAGCACAGCCGGCAAAGTCATCAAGTGCAGAGCTGCGGTGGCATGGGAGGCAGGGAAGCCACTAGTGATAGAAACCATAGAGGTTGCGCCGCCGCAGAGAGGTGAAGTGCGTCTCAAGATACTCTTCAACTCTCTTTGCCGTACAGATGTTTACTGGTGGGATGCAAAGGGCCAGACTCCCTTGTTTCCTCGCATCTTAGGCCATGAAGCTGCAGGGATTGTGGAGAGCGTAGGCGAAGGTGTGACTCATGTGAAACCCGGTGACAGTGCCCTGCCAGTGTTCACAGGAGAGTGTGGGGAATGCTCACATTGCAAGTCAAGTGGGAGCAACATGTGTGAGCTTCTCAGGATCAACACTGACAGAGGAGTTATGCTTAGTGATGGCAAAACCAGATTTTCCAAAAATGGACAACCCATTTACCACTTTGTCGGAACCTCCACATTCAGTGAGTACACCGTTGTCCATGCCGGATGTGTCGCGAAGATCAGCCCTGCTGCCCCGCTCGACAAAGTTTGCGTTGTCAGTTGCGGATACTGCACAGGTTTTGGGGCTACTGTGAATGTTGCAAAACCAGAGCCAAATTCTACTGTTGCTGTCTTTGGATTAGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGCTTTCTGGTGCATCTAGAATCATTGGGGTTGATTTAGTTCCTGGTCGATTTGAACAAGCTAAGAAATTTGGGGTCACTGACTTTGTGAACCCGAAAGATCATGACAAACCTGTTCAACAGGTCATTGTTGAGATGACTAATGGAGGAGTGGATCGTGCTATTGAATGTACTGGAAACATCCAAGCTACAATTTCAGCATTTGAATGTCTTCATGATGGTTGGGGTGTTGCCGTGATTGTTGGTGTGCCAACAAAGGATGCTGAATTCAAAACTCATCCTATAAACTTCATGGAAGGGAGAACTCTTAAGGGCACATTCTATGGCAATTTCAAAACCCGCTCTGATATTCCTTCTGTTGTGGAGAAGTACATGAACAAGGAGCTGGAACTGGAGAAATTCATCACTCACTCTGTGCCATTCTCAGAGATCAACAAAGCATTTGAATACATGCTGAAAGGGGAAGGCATAAGGTGCCTCATCCGCATGAAAGAGTAA 1143 0.4759 MCSTAGKVIKCRAAVAWEAGKPLVIETIEVAPPQRGEVRLKILFNSLCRTDVYWWDAKGQTPLFPRILGHEAAGIVESVGEGVTHVKPGDSALPVFTGECGECSHCKSSGSNMCELLRINTDRGVMLSDGKTRFSKNGQPIYHFVGTSTFSEYTVVHAGCVAKISPAAPLDKVCVVSCGYCTGFGATVNVAKPEPNSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLVPGRFEQAKKFGVTDFVNPKDHDKPVQQVIVEMTNGGVDRAIECTGNIQATISAFECLHDGWGVAVIVGVPTKDAEFKTHPINFMEGRTLKGTFYGNFKTRSDIPSVVEKYMNKELELEKFITHSVPFSEINKAFEYMLKGEGIRCLIRMKE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5806 380 Gene3D - 183 321 - -
Lja1g5806 380 CDD alcohol_DH_plants 9 377 - -
Lja1g5806 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Lja1g5806 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Lja1g5806 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Lja1g5806 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Lja1g5806 380 Gene3D - 19 370 - -
Lja1g5806 380 Pfam Zinc-binding dehydrogenase 206 333 IPR013149 -
Lja1g5806 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Lja1g5806 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Lja1g5806 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5806 Lja-Chr1 103906416 103909815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5806 15 370 Monolignol Biosynthesis Gene Families AT1G72680 25.549 9.56e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5806 K18857 - gmx:100775490 666.766