Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5804 ATGGAAGCTGAGGATGGAACTAGCAATGCTCATAATGCTGTATGCGCTGAGGATCCGTGTTTGAATCCCGGGGCTGTAAATAATGGGGTGACAATGGAAGGTGAGGATGGTGTTGCTGAAGGTGAAGAAGTTCAGGCCTGGAAGAATGAAGCTGTGAATAATGGGGTGGCTATTGGAGGTGGGGATGATGTTGCTGAAGGTGGAAAAATTCAGGGATTGAAGAATGAATCTGTAAATAATGAGGTGACAATGGAAGATGCGGATGGTGTTGCTGAAGGTGAAGAGGTTCGGTGCTTGGAGGAGGGAACTGTAGGTAACGGGGTGGCTATTGGAAGTGGGGATGATGTTGCTGAAGGTGGAAAAACTCAGGGCTTGAAGAATGAATCTGTGAATAATGGGGTGGCAATTGCTGATGGAAATGGAGTTGCTGAAGGTGAAGAGGTTCGGTGCTTGAAGGAGGGAACTGTAGATAACGGGATGGCCGTTGCAGATAGATTTGGTTCTTCTGAAAGGGACTCTGGTGGAGTTGAATGTTTACGAACTTATAAGAGGCGGAAGCGTGGAAAGTCAAGTTCAGAAATTAAAGTGCAGGAAGGAAGCGGAGAAGATGCAGAAACCATAAATCAGTTGTCAGGCCAGAAAGCTTTTAAAATTGTCGAAGATGGTCAACAATGCTCTTCACAATTTGAGTTGTCGTCTCACAGGTTACAGAGTAAAGCTAATGGGCATGCAAATGTCATGTGCAATGGATTTTCTAGTGAATCAGATGGTCGTGGTGTGACTGAGAGGTGTCAGCATGTATTCCGTAATATCTTAGCCTCTGAAAAGTTCAGTTCGTTATCTAAAGTTCTACTTGAAAACTTCCAAGGAATGAAACCTGAAAGTGTATTTGACTTTAGTGTCATCAACTCAAGGATGAAAGAACAAGCTTATGATCAATCGCCTACACTTTTCTTGTTAGATATTCAACAGGTCTGGATGAAGCTTCAAAATACTGGAAATAAGATTGTTGCCATTGCTAAGAGCCTCTCAAACATGTCAAAAACTTCATACTATGAGCAGTTCAGTAATTGGGAATCCAACTCTCACATGAAACAAGAGCAGACAGAAGAATGTGCTACATATAAAATATGCACTTGCAGGCATTGTGGGGAAAAAGCAGATGGGACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTACCATGTGTCATGTATCGAGCCTGCTGTGAAAGAAATACCCCACAAAAGCTGGTTTTGTGCCCACTGTACGGCTAGTGGAATTGGATCTCCTCATGAGGACTGTGTGGTGTGTGAAAGGTTGAATGTCCCAAAGACCCTGAACAACATTGTTGGTGAGGAAAGCTTCCATGCAAATGAGGAAACATTGAATGAATTGGAAGAGAATTCAAATTGTAGTTATGATGGGATTCAAGTTTCCAAAGGTGGAACAAACTCATCTCACTGCAAAATTTGTGGGCAGGAGGTGGATGGTGAAAAAATAAAAATATGTGGTCACTCTTTTTGCTCCAGTAAATACTACCATGTAAGGTGTTTGTCAGGCAAGCAGATTAAGTCATATGGTCGCTGTTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCTTCGCAGATCGAGATGATGATAAGATTGTTCTGTGCGATGGCTGTGATCATGCATACCATATCTATTGCATGGAACCTCCACAAAATTCTATTCCAAGAGGGAAATGGTTCTGTAGAAGCTGTGATGCAGGGATCCAAGCTATTCGTGAGGCAAGAAAGGCATATGAGACTAACAATTCGAGATCTGATGAAAATGTTTCAAAGCTAAATGATGATAAGAAATGGAACAATAAACAAGGAAAAGAATTGGATAAAGTTGGAGGAATGGACATGCTTTTAACTGCTGCCAATACTCTGAAATTTGAGGAGGGTCATACAGATTAA 1950 0.42 MEAEDGTSNAHNAVCAEDPCLNPGAVNNGVTMEGEDGVAEGEEVQAWKNEAVNNGVAIGGGDDVAEGGKIQGLKNESVNNEVTMEDADGVAEGEEVRCLEEGTVGNGVAIGSGDDVAEGGKTQGLKNESVNNGVAIADGNGVAEGEEVRCLKEGTVDNGMAVADRFGSSERDSGGVECLRTYKRRKRGKSSSEIKVQEGSGEDAETINQLSGQKAFKIVEDGQQCSSQFELSSHRLQSKANGHANVMCNGFSSESDGRGVTERCQHVFRNILASEKFSSLSKVLLENFQGMKPESVFDFSVINSRMKEQAYDQSPTLFLLDIQQVWMKLQNTGNKIVAIAKSLSNMSKTSYYEQFSNWESNSHMKQEQTEECATYKICTCRHCGEKADGTDCLVCDSCEEMYHVSCIEPAVKEIPHKSWFCAHCTASGIGSPHEDCVVCERLNVPKTLNNIVGEESFHANEETLNELEENSNCSYDGIQVSKGGTNSSHCKICGQEVDGEKIKICGHSFCSSKYYHVRCLSGKQIKSYGRCWYCPSCLCQVCFADRDDDKIVLCDGCDHAYHIYCMEPPQNSIPRGKWFCRSCDAGIQAIREARKAYETNNSRSDENVSKLNDDKKWNNKQGKELDKVGGMDMLLTAANTLKFEEGHTD* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5804 649 SUPERFAMILY FYVE/PHD zinc finger 485 538 IPR011011 -
Lja1g5804 649 SUPERFAMILY FYVE/PHD zinc finger 538 587 IPR011011 -
Lja1g5804 649 ProSiteProfiles Zinc finger RING-type profile. 490 537 IPR001841 -
Lja1g5804 649 SMART PHD_3 539 584 IPR001965 -
Lja1g5804 649 SMART PHD_3 489 538 IPR001965 -
Lja1g5804 649 SMART PHD_3 379 425 IPR001965 -
Lja1g5804 649 SUPERFAMILY FYVE/PHD zinc finger 348 425 IPR011011 -
Lja1g5804 649 Gene3D - 271 427 - -
Lja1g5804 649 MobiDBLite consensus disorder prediction 601 620 - -
Lja1g5804 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 589 IPR013083 -
Lja1g5804 649 MobiDBLite consensus disorder prediction 1 41 - -
Lja1g5804 649 Pfam PHD-finger 539 584 IPR019787 -
Lja1g5804 649 Pfam PHD-finger 380 426 IPR019787 -
Lja1g5804 649 PANTHER HISTONE ACETYLTRANSFERASE 202 645 - -
Lja1g5804 649 PANTHER D4, ISOFORM A 202 645 - -
Lja1g5804 649 ProSiteProfiles Zinc finger PHD-type profile. 377 427 IPR019787 -
Lja1g5804 649 ProSiteProfiles Zinc finger PHD-type profile. 536 586 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5804 514 603 C2H2 Transcription Factor Family AT3G01460 38.384 2.15e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g5804 PHD 4.8e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5804 - - gmx:100810450 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5804 1 103887634 103896313 Lja1g5804 1 103887634 103896313 ECH