Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5802 ATGGGTCGCGCCAAAGCAATCATGAAGCGAATTCAAGATAACAGAGTTCGTAAAACAACGTTCTTGCACAGAAGAAAGGGGTTACTCAAGAAAATGTCTGATTTTTCCACCATTTGTGATTCTCAATCCAATGCGTGCCTCATTGTGTATGATGGTGATGGTGGCCATGATTCCACACCTGAGATTTGGCCCCAAAACCCTACAGTGGTACACTCGGTTCTTCAAAAGTATGAGTGTGAGAAGAATAACAAGACTACTCCTGTCATGAAATTCGAACTTGAAGAATTTTTTGAGACAAAGAAGAAGAGTGTTGAAGATGAGATTGCCAAAGTGAAAAAAGAAATCATCAATCTCAAGTTTCCCACTTGGGACCCTATTTTTCTGAGTCTTGGAAAAGAGAGGTTGGGGCCACTCATTGCTGAATTGGATGCTAAGATCAGTGCTTGTGATCAAAGGGTTAACTTGTTAAAGGGCATGCAAGAAAGTGAAGTGATCAACGCAAACATGGCTCAAGAGGAAGAAGATATCTCTGAAACCCATGTTATCTCTGCTCCTATTAGTCCAGTTATTGATGGAATGGTGGATTCTACTGAACAAGTAAATGGGCATTTGGAATGTACAAATCAAGTTATTGATGAAATGGTGGATTCTACTGATCAAGTTAATGGGACTTTGGATTGTACAAATCAAGTTTTTGAGCCAGTGGATTCAGATAGTGGGCTTGAGGAGTGGGCTTGCAAATTTCTTGAGAGTGATTATTGGGCTAATCAACAAGGTGAACCAGTGGATTCGGCTAGCGGGCTTGAGGATTGGGCTTGCAAATTTCCTGAGAGAGCTAATCAACAAGGTGATGATTTTCTGTGGTGGTTTGATGAATCTGATGAAGATCTTTTCCAGAATACTCCTTTCAGTTGCAGGATCAATGAATAG 930 0.4075 MGRAKAIMKRIQDNRVRKTTFLHRRKGLLKKMSDFSTICDSQSNACLIVYDGDGGHDSTPEIWPQNPTVVHSVLQKYECEKNNKTTPVMKFELEEFFETKKKSVEDEIAKVKKEIINLKFPTWDPIFLSLGKERLGPLIAELDAKISACDQRVNLLKGMQESEVINANMAQEEEDISETHVISAPISPVIDGMVDSTEQVNGHLECTNQVIDEMVDSTDQVNGTLDCTNQVFEPVDSDSGLEEWACKFLESDYWANQQGEPVDSASGLEDWACKFPERANQQGDDFLWWFDESDEDLFQNTPFSCRINE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5802 309 PANTHER PROTEIN, PUTATIVE-RELATED 3 224 - -
Lja1g5802 309 PANTHER MADS BOX PROTEIN 3 224 - -
Lja1g5802 309 Coils Coil 94 114 - -
Lja1g5802 309 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja1g5802 309 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Lja1g5802 309 SMART madsneu2 1 65 IPR002100 GO:0003677|GO:0046983
Lja1g5802 309 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja1g5802 309 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Lja1g5802 309 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5802 Lja-Chr1 103814925 103815854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5802 1 124 Type I MADS-box Gene Family AT5G55690 33.858 1.93e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g5802 SRF-TF 8.4e-11 No_clan