Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5800 ATGAAACTGAAGGCAAAACACACGCACCTGAGGTTGTTAATAGTATCAATAGCCGTGGTATTAGTAGCTGTTGCAGCAGATGATGAAACACCCCTTGCTTCACCACCAAAACAGGCCCTATCTGGCTGCAACTACACTTGTGGAGACATCGAAATTCCATATCCTTTCGGGATTGGAATATCATCTACAGACCAAAAAACCTGTTACTTAGACTCCAAGTTCAGTCTCAAGTGCAATAACTCGAGATTGTACTGGGGCAACGTGCGTGTTAACAATATATCCATCGACCTGGGGGAGATGGATGTGTTGTTTAACATCTCTAGGAAATGCTATAGGCAAGATGGAAGCAGTTTTTGGTCCTACCCCTGGCTCCACACGGCTAGCTTCAGCATTTCAAGCACTGAGAACAAGTTCATAACCGTTGGCTGCAACAATTATGGCTATCTCAACAGCAATTACAATGATGAGGTGTACTCGACTGGGTGCCTAACAAGATGTAATGGTGGCAATAGAATGATCAACAATGGGACGTGTTCTGGGATAGGGTGTTGCCAGGTGGATATTCCTCCCAGAATGAGGAATATCACCGTGCAAGCGTTCGCGTTCGGGTTCTCAAATTCAACGGAAGAGTGGTTGGGGAGTTGCAGCTATTCATTCGTCGCGAAGAGCGGCTCATATAATTTCTCTGTGCAAGATTTAGTAGATTTGCCTTACCCGAATTTCCCCTTGGTTATTGACTGGACCGTAGGGGATAAGAGCTGTAATGTTTCTGAGAAGGGAAGTGATTATGTGTGCAAGAAGAATAGCTATTGTGATGATGAGGGTGTGGATGTTGGTTACCGGTGTAGATGCAAACCTGGATTTGAGGGAAATCCATATCATCCTGATGGCTGCATAGATATCGACGAATGTAAGTCATCGAACAATATATGCATTGATGAACATCATTGTCTAAACACCAACGGAAATTACACATGTTTCTGTCCTGAGGGGGAAACCGGAACTGGAACAAAGGAAGGGAGTTGCCAAAAAAGTGATGTCCGCACCAAGGTTATCATTGGAGTTGGAGCAGGATTTATAGTTCTATTTGTGGCGACTGCATTGTTGTACCTAATGTACCAGCGAAGGAAACTAATCAAGTTAAAAGAGAAATTCTTCAATGAGAATGGCGGTTTCATTCTACTGCAACAATTGCGTGCAAGAGAAGATTCCTCCCAATCAGCTCAAATATTCACAGAAGATGAACTCAAGAAAGCCACCAGCAACTATGATGAGGGTTTAATCATTGGTCGAGGAGGTTATGGTATAGTTTTCAAAGGAATTCTATCGGATAAACGAATCGTTGCGATCAAGAAGTCCAGAATTGCAGATAAGAGTCAAATCGAGCAATTCATTAATGAAGTGGTTGTTCTGTCCCAAATCAATCATAGGAATGTGGTCAAACTCTTGGGATGTTGTTTGGAGACTGAAGTTCCTTTACTAGTTTATGAATTTGTTAGCAATGGTACCCTTCATGATTTTATTCATAGTGAAGGAAAGGTGGATAATGTAACATGGAAAACTCGTCTGAGGATTGCGGCCGAGGCAGCTGGAGCATTGTCATATCTACACTCAGCCGCCTCGGTACCGATTATCCACAGAGATGTAAAGGGTGCCAACATTCTTTTGGATGACGCTTACACTGCCAAAGTGTCAGATTTCGGAGCTTCGAGATTGGTCCCACTTGACCAAACTAATATAGCCACAATGGTGCAGGGGACAATTGGATACTTAGACCCGGAGTATATGCAAACACAACAACTAACAGAGAAAAGTGATGTATATAGCTTTGGTGTAGTGCTTGTAGAGCTTCTAACAGGGGAGAAACCTATCTCTTTTGACAGGCCGGAAGAGAAAAGAAGTTTGGCGATGCACTTTCTATCTTGCTTGAAAGAGGATCGCTTGTTTGAAGTTGTTCAAGTTGAAATCATGAATGAAGAAAATAAGCAAGAGATCAAGGAGGTTGCTATTCTTGCTGCAAGGTGTTTGAGGCTTAGAGGGGATGAAAGGCCTAGCATGAAGGAAGTGACTATGGAGTTGGAGGGATTAAGGCTAATTGAGAAGCACCCTTGGACCAGTAAAGAACAAGATTTAGACGAGACTCAATACTTGCTTGGCAAGGCATCATCTAGTATTTATGAAACTGGTGATAGCAGCAACTTTGGATATACTACTGGGTACGACAGCTTGAAAGATAATGTCCCCGTTGCATTGAATGATGGAAGATAA 2268 0.4277 MKLKAKHTHLRLLIVSIAVVLVAVAADDETPLASPPKQALSGCNYTCGDIEIPYPFGIGISSTDQKTCYLDSKFSLKCNNSRLYWGNVRVNNISIDLGEMDVLFNISRKCYRQDGSSFWSYPWLHTASFSISSTENKFITVGCNNYGYLNSNYNDEVYSTGCLTRCNGGNRMINNGTCSGIGCCQVDIPPRMRNITVQAFAFGFSNSTEEWLGSCSYSFVAKSGSYNFSVQDLVDLPYPNFPLVIDWTVGDKSCNVSEKGSDYVCKKNSYCDDEGVDVGYRCRCKPGFEGNPYHPDGCIDIDECKSSNNICIDEHHCLNTNGNYTCFCPEGETGTGTKEGSCQKSDVRTKVIIGVGAGFIVLFVATALLYLMYQRRKLIKLKEKFFNENGGFILLQQLRAREDSSQSAQIFTEDELKKATSNYDEGLIIGRGGYGIVFKGILSDKRIVAIKKSRIADKSQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHDFIHSEGKVDNVTWKTRLRIAAEAAGALSYLHSAASVPIIHRDVKGANILLDDAYTAKVSDFGASRLVPLDQTNIATMVQGTIGYLDPEYMQTQQLTEKSDVYSFGVVLVELLTGEKPISFDRPEEKRSLAMHFLSCLKEDRLFEVVQVEIMNEENKQEIKEVAILAARCLRLRGDERPSMKEVTMELEGLRLIEKHPWTSKEQDLDETQYLLGKASSSIYETGDSSNFGYTTGYDSLKDNVPVALNDGR* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5800 755 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 317 328 IPR000152 -
Lja1g5800 755 CDD EGF_CA 300 335 - -
Lja1g5800 755 Gene3D Transferase(Phosphotransferase) domain 1 499 719 - -
Lja1g5800 755 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 15 723 - -
Lja1g5800 755 Pfam Wall-associated receptor kinase galacturonan-binding 43 96 IPR025287 GO:0030247
Lja1g5800 755 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 723 IPR045274 GO:0007166
Lja1g5800 755 ProSitePatterns Protein kinases ATP-binding region signature. 429 452 IPR017441 GO:0005524
Lja1g5800 755 Pfam Calcium-binding EGF domain 300 342 IPR001881 GO:0005509
Lja1g5800 755 SMART egfca_6 300 343 IPR001881 GO:0005509
Lja1g5800 755 Pfam Protein kinase domain 425 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5800 755 ProSiteProfiles EGF-like domain profile. 300 343 IPR000742 -
Lja1g5800 755 Gene3D Plasmodium vivax P25 domain 244 350 - -
Lja1g5800 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Lja1g5800 755 SUPERFAMILY Protein kinase-like (PK-like) 405 693 IPR011009 -
Lja1g5800 755 CDD STKc_IRAK 429 696 - -
Lja1g5800 755 SUPERFAMILY EGF/Laminin 299 336 - -
Lja1g5800 755 Gene3D Phosphorylase Kinase; domain 1 397 498 - -
Lja1g5800 755 ProSitePatterns Calcium-binding EGF-like domain signature. 300 326 IPR018097 GO:0005509
Lja1g5800 755 SMART egf_5 253 299 IPR000742 -
Lja1g5800 755 SMART egf_5 303 343 IPR000742 -
Lja1g5800 755 ProSiteProfiles Protein kinase domain profile. 423 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5800 755 SMART serkin_6 423 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5800 Lja-Chr1 103549938 103558717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5800 38 755 Receptor kinase-like Gene Family AT1G21230 45.157 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g5800 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5800 - - gsj:114381577 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5800 1 103549938 103558717 Lja1g5800 1 103549938 103558717 ECH