Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5799 ATGGCCACACCAAAAGACGGCTGGGCGGCAAGCAATGGAGCTGAAGGTTTTCCTCACACAAAATTCCCCTTGGTTCTTGATTGGACAGTAGGGAACAAGGGCTGCAATGCTTCAAAGAGTGGTACCGACTACGCGTGCAAGAACAATAGTCTCTGCGTTGATGAGGACATAGATTATGGTTACCGATGCACATATATTGATGAGTGTAAGAGGTCGGGTCATACATGCATGGATGAAAATCACTGTCGGAACATCAATGGGTCTTACCAATGCTTTTGTCCTAAGGGGCAATCAGGAGATGGAACTGAGAAAAGAGGGTGCCACAAACAGGAAGTACTTACCAAAGTTATAATTGGAGCAGGTGCAGGGCTTATTATTCTATTTGTGGGGATTGCCTCCATGTACTTACTATACCAGAAAAGGAAACTAATGAAGCTAAAAGAGAAATTCTTCCGTGAGAATGGGGGTTTCATTTTGCAACAAAAACTCCATGCAAGAGAAGATTCCTCCCAAACAGCTAAAATATTCACAGAAGATGAACTCAAGAAGGCCACCAACAACTATGACGAGAGCGTAATCATTGGTAGAGGAGTTTTTGGCATAGTTTTCAAGGGAATTCTACCAGATAAACGGATTATTGCGATCAAGAAATCCAAAATAGTAGATAAGAGTCAAATCGAGCAATTCATTAATGAGGTGGTTGTTTTGTCCCAAATCATTCACAAAAATGTGGTCAAACTCTTGGGATGTTGTTTGGAGACTGAAGTTCCTTTACTAGTTTATGAGTTTGTCAGCAATGGTACCCTTCATGATTTTATTCACAATGGAGGCAAGGAAGAAAATGAAACATGGAAAACTCGTTTAAGGATAGCAGCAGAGGCAGCTGGAGCTCTGTCATATCTGCACTCGGATGCCTTTGTACCCATTATCCACAGAGATGTAAAGGGTGCCAACATTCTCTTGGATGACACTTACAGAGCCAAAGTGTCAGATTTTGGAGCTTCAAAATTGGTTCCGCTTGACCAAGCAGATATAGCCACAATGGTGCAGGGAACTCTTGGATACTTAGACCCAGAGTATATGCAATCACAACATTTGACAGAGAAAAGTGATGTATATAGCTTCGGGGTAGTGCTAGTAGAGCTGCTAACAGGGGAGAAACCTATTTCTTTTGACAGGCAAGAAGAGAAAAGAAGCCTAGCTATGCACTTTCTATCTTGCTTGAAAGAGGACCGCATGTTTGATCTTGTTCAAGCTGGAATCATGAATGAGGAAAATAAGCAAGAGATAAAGGAGGTTCCTGTTCTTGCAGCAAAGTGTTTGAGACTTAGAGGCGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGATTAAGACTAATGGAGAAGCACCCCTGGACAAGTAGAGAACAAGATTTGGAGGAGACTTGA 1440 0.4236 MATPKDGWAASNGAEGFPHTKFPLVLDWTVGNKGCNASKSGTDYACKNNSLCVDEDIDYGYRCTYIDECKRSGHTCMDENHCRNINGSYQCFCPKGQSGDGTEKRGCHKQEVLTKVIIGAGAGLIILFVGIASMYLLYQKRKLMKLKEKFFRENGGFILQQKLHAREDSSQTAKIFTEDELKKATNNYDESVIIGRGVFGIVFKGILPDKRIIAIKKSKIVDKSQIEQFINEVVVLSQIIHKNVVKLLGCCLETEVPLLVYEFVSNGTLHDFIHNGGKEENETWKTRLRIAAEAAGALSYLHSDAFVPIIHRDVKGANILLDDTYRAKVSDFGASKLVPLDQADIATMVQGTLGYLDPEYMQSQHLTEKSDVYSFGVVLVELLTGEKPISFDRQEEKRSLAMHFLSCLKEDRMFDLVQAGIMNEENKQEIKEVPVLAAKCLRLRGEERPSMKEVAMELEGLRLMEKHPWTSREQDLEET* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5799 479 SUPERFAMILY Protein kinase-like (PK-like) 170 466 IPR011009 -
Lja1g5799 479 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 82 93 IPR000152 -
Lja1g5799 479 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 22 478 - -
Lja1g5799 479 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 478 IPR045274 GO:0007166
Lja1g5799 479 SMART egfca_6 66 108 IPR001881 GO:0005509
Lja1g5799 479 CDD EGF_CA 66 100 - -
Lja1g5799 479 ProSiteProfiles Protein kinase domain profile. 188 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5799 479 Gene3D Laminin 66 107 - -
Lja1g5799 479 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Lja1g5799 479 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Lja1g5799 479 Pfam Calcium-binding EGF domain 66 102 IPR001881 GO:0005509
Lja1g5799 479 ProSiteProfiles EGF-like domain profile. 65 103 IPR000742 -
Lja1g5799 479 SMART serkin_6 188 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5799 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Lja1g5799 479 SUPERFAMILY EGF/Laminin 66 101 - -
Lja1g5799 479 Gene3D Phosphorylase Kinase; domain 1 156 263 - -
Lja1g5799 479 Pfam Protein kinase domain 188 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5799 Lja-Chr1 103546703 103548811 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5799 21 472 Receptor kinase-like Gene Family AT1G21250 48.837 6.59e-154 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g5799 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5799 - - gmx:106795446 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5799 1 103546703 103548811 Lja1g5799 1 103546703 103548811 ECH