Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5797 ATGGAGGTGAAGATGGAGCAGTTGCGACTGTACCGCGTGCTAATGGCTGCACTAGCATTAGCCCTGTTAGTAGCAGTTGCAGCTGGTGAAGCCATTCCTTCAGCAGCAGCAGCCACAACCAAAGTCCAGACTCTGCCTGGCTGCAACTCCACTTGTGGAGATGTCAATATTCCTTATCCTTTTGGCATAGGCAACTCATCATCAAAATCAGATCAACCTTGTTACTTGAAGCCCAAATTCCAACTCCATTGCAATGATTCTAAACTATATGTTGGGAACCTACAAGTTCTAGCCATCACCATCGAGGCCATCGCCATCGAGGGTCAATTGGACGTAATGTTTAACGTCTCGTTCAAATGCTATAACTCAACTGGAATCAATTATTGGAGCAACCCTTGGCTCGACACAGCAAGTTTCAGCATTTCAAGCAAAGAAAACAAGTTCCTAACCGTAGGCTGTGACAGTTATGGCTATCTCAACAGCTTTTACGACGAGCAGTCATATTCAACAGGCTGCTTGACAAGATGTTATGGCCATAGAATAAGGTCAATCATCGAAAACGAAACTTGTTCGGGCATAGGGTGTTGCCAGGTGGACGTTCCTCCGAGAATGAGGAATATCACTGTAGAAGCATTTGGCTTTTCCAATTCAACGGAATCGTTGGAAACCTGCACCTATTCATTTGTTGTGAAGCAAGGCTCGTATAATTTTTTTGCCACTGATTTAAAAGCTTTTCCTCACACAGAATTCCCCTTGGTTCTTGATTGGACTGTAGGAAACAAGAGCTGCGATTCTTCAAAGATTGGTACCGACTACGCGTGCAAGAACAATAGTCTCTGCGTTGATGAGGACATGGATTATGGTTACCGATGCACATGTATGGCAGGTTATGAAGGAAACCCATATCATCCTGATGGCTGCATAGATATTGATGAGTGTAAGAGGCCGGGTCATAAATGCATAGATGAAAATCACTGTCGGAACACCAATGGGTCTTACAAATGCTTTTATCCTAAGGAAGTACTTACCAAAGTTATAATTGGAGCAGCAGCAGGGCTTATTATTCTATTTGTGGGGATTGCCACCCTGTACTTAACATACCAGAAAAGGAAACTAATGAAGCTAAAAGAGAAATTCTTCCGTGAGAATGGGGGGTTCATTTTGCTACAAAAACTCAGTACAAGAGAAGATTCCTCCCAAACTGCTAAAATTTTCACAGAAGATGAACTCAAGAAGGCCACTAACAACTATGACGAGAGCTTAATCATTGGTAGAGGAGGTTATGGCATAGTTTTCAAAGGAGTTCTACCAGATAAACGGATTGTTGCGATCAAGAAATCCAAAATAGTAGATAAGAGTCAAATCGAGCAATTCATTAACGAGGTGGTTGTTCTGTCCCAAATCATTCATAGAAATGTGGTCAAACTCTTGGGATGTTGTTTGGAAACTGAAGTTCCTTTACTAGTTTATGAGTATGTCAGCAATGGTACCCTTCATGATTTGATTCACAATGGAGGCAAGGAAGAAAATGTAACATGGAAAACTCGTTTAAGGATAGCAGCAGAGGCAGCTGGAGCTCTCTCATATCTGCACTCAGATGCCTCTGTACCCATTATCCACAGAGATGTAAAGGGTGCCAACATTCTCTTAGATGACACTTACAGAGCCAAAGTGTCAGATTTTGGAGCTTCAAAATTGGTTCCCCTTGACCAAGCTGATATAGCCACAATGGTGCAGGGAACTCTTGGATACTTAGACCCAGAGTATATGCAATCACAACATTTGACAGAGAAAAGTGATGTATATAGCTTTGGGGTAGTGCTTGTAGAGCTGCTAACAGGGGAGAAACCTATTTCTTTTGACAGGCCAGAAGAGAAAAGAAGCCTAGCTATGCACTTTCTGTCTTGCTTGAAAGAGGACCGCATGTTTGATGTTGTTCAAGCCGGAATCATGAATGAAGAAAATAAGCAAGAGATAAAGGAGGTTGCTGTTCTTGCAGCAAAGTGTTTGCGGCTTAAAGGCGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAGTTAGAGGGATTAAGGCTAATGGAGAAGCACCCTTGGACAAATAAAGAACAAGATTTGGAGGAGACTCGATACTTGCTTCACGAGGAAGCTTCAAACATTTATTATGAATGTGGTGATAGCAGCAGCCTTCAGAATACTGGGTATGATACCAGTAGGGATCATGTAGAGCTGGTTGCCTTGCAAGGTGGAAGATGA 2253 0.4261 MEVKMEQLRLYRVLMAALALALLVAVAAGEAIPSAAAATTKVQTLPGCNSTCGDVNIPYPFGIGNSSSKSDQPCYLKPKFQLHCNDSKLYVGNLQVLAITIEAIAIEGQLDVMFNVSFKCYNSTGINYWSNPWLDTASFSISSKENKFLTVGCDSYGYLNSFYDEQSYSTGCLTRCYGHRIRSIIENETCSGIGCCQVDVPPRMRNITVEAFGFSNSTESLETCTYSFVVKQGSYNFFATDLKAFPHTEFPLVLDWTVGNKSCDSSKIGTDYACKNNSLCVDEDMDYGYRCTCMAGYEGNPYHPDGCIDIDECKRPGHKCIDENHCRNTNGSYKCFYPKEVLTKVIIGAAAGLIILFVGIATLYLTYQKRKLMKLKEKFFRENGGFILLQKLSTREDSSQTAKIFTEDELKKATNNYDESLIIGRGGYGIVFKGVLPDKRIVAIKKSKIVDKSQIEQFINEVVVLSQIIHRNVVKLLGCCLETEVPLLVYEYVSNGTLHDLIHNGGKEENVTWKTRLRIAAEAAGALSYLHSDASVPIIHRDVKGANILLDDTYRAKVSDFGASKLVPLDQADIATMVQGTLGYLDPEYMQSQHLTEKSDVYSFGVVLVELLTGEKPISFDRPEEKRSLAMHFLSCLKEDRMFDVVQAGIMNEENKQEIKEVAVLAAKCLRLKGEERPSMKEVAMELEGLRLMEKHPWTNKEQDLEETRYLLHEEASNIYYECGDSSSLQNTGYDTSRDHVELVALQGGR* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5797 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 23 717 - -
Lja1g5797 750 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524
Lja1g5797 750 ProSitePatterns Calcium-binding EGF-like domain signature. 309 335 IPR018097 GO:0005509
Lja1g5797 750 Pfam Calcium-binding EGF domain 309 335 IPR001881 GO:0005509
Lja1g5797 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 717 IPR045274 GO:0007166
Lja1g5797 750 ProSiteProfiles Protein kinase domain profile. 417 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5797 750 Gene3D Laminin 312 343 - -
Lja1g5797 750 SMART serkin_6 417 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5797 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Lja1g5797 750 Gene3D Transferase(Phosphotransferase) domain 1 493 715 - -
Lja1g5797 750 Pfam Protein kinase domain 419 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5797 750 CDD STKc_IRAK 423 690 - -
Lja1g5797 750 Gene3D Phosphorylase Kinase; domain 1 389 492 - -
Lja1g5797 750 Pfam Wall-associated kinase 187 293 IPR013695 GO:0004674|GO:0016021
Lja1g5797 750 SUPERFAMILY Protein kinase-like (PK-like) 398 687 IPR011009 -
Lja1g5797 750 Gene3D Laminin 261 311 - -
Lja1g5797 750 Pfam Wall-associated receptor kinase galacturonan-binding 48 102 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5797 Lja-Chr1 103526494 103530369 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5797 35 750 Receptor kinase-like Gene Family AT1G21230 44.860 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g5797 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5797 - - gmx:106795446 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5797 1 103526494 103530369 Lja1g5797 1 103526494 103530369 ECH
Lja1g5797 1 103526494 103530369 Lja1g4967 1 69258428 69263560 PCT