Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5795 ATGAGCGGTAAGATGTCAAATCATATATGCATAGATGAAAATCACTGTCACAACATCAATGGGTCTTACCAATGCTTTTGTCCTAAGGGGCAATCTGGAGATGGAACTGAGAAAGGAGGGTGCCACAAAAAGGAAGTACTTACCAAAGTTATAATTGCAGCAGGTGCAGGGATTATTATTCTATTTGTGGGGATTGCCTCCCTATACATAACATACCAGAAAAGGAAACTAATGAAGCTAAAAAAGAAATTCTTCCGTGAGAATGGGGGTTTCATTTTGCTCCAAAAACTCAGTACAAGAGAATATTCCTCCCAAACTGTTAAAATTTTCACAGAAGATGAACTCAAGAAGGCCACCAACAACTATGACGAGAGCTTAATCATCGGTAGAGGAGGTTATGGCATAGTTTTCAAAGGAGTTCTACCAGATAAACGGATTGTTGCGATCAAGAAGTCCAGAATCGCAGATAAGAGTCAAATTGAGCAATTCATTAACGAGGTGGTTGTTCTGTCCCAAATCATTCATAAGAATGTGGTCAAACTCTTGGGATGTTGTTTGGAGACTGAAGTTCCTTTACTAGTTTATGAGTATGTCAGCAATGGTACCCTTCATGATTTGATTCACAATGGAGGCAAGGAAGAAAATGTAACATGGAAAACTTGTCTAAGGATAGCAGCAGAGGCAGCTGGAGCTCTCTCATATCTGCACTCAGATGCCTTTGTACCCATTATCCACAGAGATGTAAAGGGTTCCAACATTCTCTTGGATGAAACTTACAGAGCCAAAGTGTCAGATTTTGGATCTTCAAAATTGGTTCCGCTTAACCAAGTTGATATAGCCACAATAGTGCAGGGAACTCTTGGATACTTAGACCCAGAGTATATGCAATCACAAAAATTAACAGAGAAAAGTGATGTATATAGCTTTGGGGTAGTGCTTGTAGAGCTGCTATCTGGGGAGAAACCTATTTCTTTTGACAGACCAGAAGACAAAAGAAGCCTTGCTATGCACTTTCTATCTTGCTTGAAAGAGGACCGCATGTTTGATGTTGTTCAAGCTGGAATCATGAATGAAGAAAATAAGCAAGAGATAAAGGAGGTTGCTGTTCTTGCAGCAAAATGTTTGCGGCTTAAAGGCGAGAAAAGACCAAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGATTAAGGCTAATGGAGAAGCACTCCTGGACAAATAATGAACTAGATTTGGAGGATACTCGATACTTGCTTCACGAGGAAGCTTCAAACATTTATTATGAAGGTGGTGATAGCAACAGCCTTCAGAATACTGGAAGATGA 1320 0.4023 MSGKMSNHICIDENHCHNINGSYQCFCPKGQSGDGTEKGGCHKKEVLTKVIIAAGAGIIILFVGIASLYITYQKRKLMKLKKKFFRENGGFILLQKLSTREYSSQTVKIFTEDELKKATNNYDESLIIGRGGYGIVFKGVLPDKRIVAIKKSRIADKSQIEQFINEVVVLSQIIHKNVVKLLGCCLETEVPLLVYEYVSNGTLHDLIHNGGKEENVTWKTCLRIAAEAAGALSYLHSDAFVPIIHRDVKGSNILLDETYRAKVSDFGSSKLVPLNQVDIATIVQGTLGYLDPEYMQSQKLTEKSDVYSFGVVLVELLSGEKPISFDRPEDKRSLAMHFLSCLKEDRMFDVVQAGIMNEENKQEIKEVAVLAAKCLRLKGEKRPSMKEVAMELEGLRLMEKHSWTNNELDLEDTRYLLHEEASNIYYEGGDSNSLQNTGR* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5795 439 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Lja1g5795 439 ProSiteProfiles Protein kinase domain profile. 122 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5795 439 Gene3D Transferase(Phosphotransferase) domain 1 198 418 - -
Lja1g5795 439 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 420 IPR045274 GO:0007166
Lja1g5795 439 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 14 420 - -
Lja1g5795 439 SMART serkin_6 122 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5795 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Lja1g5795 439 Gene3D Phosphorylase Kinase; domain 1 93 197 - -
Lja1g5795 439 Pfam Protein kinase domain 124 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5795 439 SUPERFAMILY Protein kinase-like (PK-like) 99 392 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5795 Lja-Chr1 103521263 103522730 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5795 8 405 Receptor kinase-like Gene Family AT1G21230 52.956 1.83e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g5795 Pkinase 8.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5795 - - gmx:106795446 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5795 1 103521263 103522730 Lja1g5795 1 103521263 103522730 ECH
Lja1g5795 1 103521263 103522730 Lja1g4651 1 61134127 61141840 PCT