Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5792 ATGGAGGTGAAGGTGAAGCAGTTGCAATTGCACCTCGTGCTAATTGCTGCACTAGCATTAGCCCTCGTAGCAGCAGAAACCAAAGTACAGTCCCTGCCTGGCTGCAACTCCACTTGTGGAGATGTCAATATTCCTTATCCTTTTGGCATAGGCAACTCATCATCAAAACCAGATCAACCTTGTTACTTGGAGCGCAAATTCAAACTCGACTGCAATGATTCTAAACTATATTTTAGTAACGTACAACTACAAGTTCTAGACATCACCATCATTATGGGTCAAGTGGACGTAATGTTTTTCGTCTCATCGGAATGCAATCAACGACCACTTTTTGCAGCAAGTCCCCCTCCTATCAGCATTTCAACGACGGAAACCCAAGATGGGAGTGAGAGCCGTCAATATGGGAACCTCTACACAGCAAGTTTCAGCATTTCAAGCAAGGAAAACAAGTTCCTAACCGTGGGCTGCGACAGTTATGGCTATCTCAACAGTGTTTACGAGGAGCACACATATACAACTGGGTGCTTGACAAGATGTTATGGCAAAAAAACAATAATAAAAAACGGAACTTGTTCAGGCATAGGGTGTTGCCAGGTGGACGTTCCTCCAAGAATGAGGAATATCACAGTAGAAGCATCTGGGTTTCCCAATTCAACGGAATCGTTGGGAACCTGCACCTATTCATTTGTTGTTAAGCAAGGCTCGTATAATTTTTCTACCACTGATTTAGAAGATTTTCCTCACACAGAACTCCCCTTGGTTCTTGATTGGACTGTAGGAAACAGCAGCTGCGATGCTTCAAAGAGTGGTACCGACTACGCGTGCAAGAGCAATAGTTACTGCAACGACAAGGACTTGGATTATGGTTATCGATGCACATGTATGCCAGGTTATGAAGGAAACCCGTACCATCCTCCTGACGGCTGCACAGATATTGATGAGTGTAAGGGGCCGGATCATGGATGCATAGATGAAAATCACTGTCGCAACAAAAATGGGTCTTATGATTGCTTTTGTCCTAAGGGGCAATCTGAAGTACTTACAAAAGTTATAATTGGAGCAGGAGCAGGGATTATTATTCTATTTGTGGTGATTGCCTCTCTGTACTTAACATACCAGAAAAGGAAACTAATGAAGCTAAAAGAGAAATTCTTCCGTGAGAATGGGGGCTTCATTTTGCAACAAAAACTCCGTACAAGAGAAGATTCCTCCCAAACTGCTAAAATTTTCACAGAACATGAACTAAACAAGGCCACCAACAACTATGATGAGAGCTTAATCATTGGTAAAGGAGGTTATGGCATAGTTTTCAAAGGAGTTCTGCCAGATAAACGGATTGTTGCAATCAAGAAATCCAAAATAGTAGATAAGAGTCAAATCGAGCAATTCATTAATGAGGTGGTTGTTCTGTCCCAAATCATTCATAGGAATGTGGTCAAACTCTTGGGATGCTGTTTGGAGACTGAAGTACCTTTACTAGTTTATGAGTATGTCAGCAATGGTACCCTTCATGATTTGATTCACAATGGAGGCAAGGAAGAAAATGTAACATGGAAAACTCGTCTAAGGATAGCAGCAGAGGCAGCTGGAGCTCTGTCTTATCTGCACTCGGATGCCTTTGTACCCATTATCCACAGAGATGTAAAGGGTGCCAACATTCTCTTGGATGACGATTACAGAGCCAAAGTGTCAGATTTTGGAGCTTCAAAATTGGTTCCGCTTGACCAAACTGGTATAGCCACAATGGTGCAGGGCACTCTTGGATACTTAGACCCAGAGTATATGCAATCACAACATTTGACAGAGAAAAGTGATGTATATAGCTTTGGGGTAGTGCTTGTAGAGCTGCTAACTGGGGAGAAACCTATTTCATTTGACAGGCCAGAAGAGAAAAGAAGCCTAGCTATGCACTTTCTTTCTTGCTTGAAAGAGGACCGCATGTTTGATGTTGTTCAAGCTGGAATCATGAATGAAGAAAATAAGCAAGAGATAAAGGAGGTTGTTGTTCTTGCAGCAAAGTGTTTGCGGCTTAAAGGCGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGATTAAGGCTAATGGAGAAGCACCCCTGGACAAGTAGAGAACAAGATTTGGAGGAGACTCCATACTTTCTTCACAATGAATCTTCAAACATTTATTATGAATGTGGTGATAGGAGCAGCCTTCAGAATACTGGGTATGATACCAGTAGGGATCATGTACCGCTGGTTGCCTTGCATGGTGGTTCTGTGACAACATATTGTAATCTATATAAGATATCTTGGTTTTCAGTTGAATGTGTGTGA 2322 0.4233 MEVKVKQLQLHLVLIAALALALVAAETKVQSLPGCNSTCGDVNIPYPFGIGNSSSKPDQPCYLERKFKLDCNDSKLYFSNVQLQVLDITIIMGQVDVMFFVSSECNQRPLFAASPPPISISTTETQDGSESRQYGNLYTASFSISSKENKFLTVGCDSYGYLNSVYEEHTYTTGCLTRCYGKKTIIKNGTCSGIGCCQVDVPPRMRNITVEASGFPNSTESLGTCTYSFVVKQGSYNFSTTDLEDFPHTELPLVLDWTVGNSSCDASKSGTDYACKSNSYCNDKDLDYGYRCTCMPGYEGNPYHPPDGCTDIDECKGPDHGCIDENHCRNKNGSYDCFCPKGQSEVLTKVIIGAGAGIIILFVVIASLYLTYQKRKLMKLKEKFFRENGGFILQQKLRTREDSSQTAKIFTEHELNKATNNYDESLIIGKGGYGIVFKGVLPDKRIVAIKKSKIVDKSQIEQFINEVVVLSQIIHRNVVKLLGCCLETEVPLLVYEYVSNGTLHDLIHNGGKEENVTWKTRLRIAAEAAGALSYLHSDAFVPIIHRDVKGANILLDDDYRAKVSDFGASKLVPLDQTGIATMVQGTLGYLDPEYMQSQHLTEKSDVYSFGVVLVELLTGEKPISFDRPEEKRSLAMHFLSCLKEDRMFDVVQAGIMNEENKQEIKEVVVLAAKCLRLKGEERPSMKEVAMELEGLRLMEKHPWTSREQDLEETPYFLHNESSNIYYECGDRSSLQNTGYDTSRDHVPLVALHGGSVTTYCNLYKISWFSVECV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5792 773 Pfam Wall-associated receptor kinase galacturonan-binding 35 89 IPR025287 GO:0030247
Lja1g5792 773 SUPERFAMILY Protein kinase-like (PK-like) 403 692 IPR011009 -
Lja1g5792 773 SMART egfca_6 311 350 IPR001881 GO:0005509
Lja1g5792 773 Pfam Wall-associated kinase 189 294 IPR013695 GO:0004674|GO:0016021
Lja1g5792 773 Pfam Calcium-binding EGF domain 311 342 IPR001881 GO:0005509
Lja1g5792 773 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 722 IPR045274 GO:0007166
Lja1g5792 773 Gene3D Transferase(Phosphotransferase) domain 1 498 716 - -
Lja1g5792 773 CDD STKc_IRAK 428 695 - -
Lja1g5792 773 ProSitePatterns Protein kinases ATP-binding region signature. 428 451 IPR017441 GO:0005524
Lja1g5792 773 Gene3D Phosphorylase Kinase; domain 1 390 497 - -
Lja1g5792 773 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 15 722 - -
Lja1g5792 773 ProSiteProfiles Protein kinase domain profile. 422 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5792 773 Gene3D Laminin 314 346 - -
Lja1g5792 773 ProSitePatterns Calcium-binding EGF-like domain signature. 311 337 IPR018097 GO:0005509
Lja1g5792 773 SUPERFAMILY EGF/Laminin 309 343 - -
Lja1g5792 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Lja1g5792 773 SMART serkin_6 422 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5792 773 Gene3D Laminin 268 313 - -
Lja1g5792 773 Pfam Protein kinase domain 424 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5792 Lja-Chr1 103418154 103420822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5792 8 741 Receptor kinase-like Gene Family AT1G21230 42.368 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g5792 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5792 - - gsj:114381577 949.118