Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5791 ATGGAGGTGAAGGTGAAGCAGTTGCAATTGCACCTCATGTTAATGGCTGAACTAGCATTAGCCCTGGTAGTAGCAGTTGCAGCTGGTGAAGCCACTTCTTCAGTAGCAGCAGCAACCAAAGTACAGTCCCTGCCTGGCTGCAACTCCACTTGTGGAGATGTCACAAATATTCCTTATCCTTTTGGCATAGGCAACTCATCATCAAAACCAGATCAACCTTGTTACTTGAAGCACAAATTCAGACTCCATTGCAATGATTCTAAACTATATTTTGGGAACGTACCAGTTCTAGCCATCGCCATCGAGGGTCAAATGGATGTAATGCTTGACATCTCATCGAAATGCTATAGAAAAAATGGAAGCAATTATTGGAGCAACCCTTGGCTCTACACAGCAAGTTTCAGCATTTCAAGCACGGAAAACAAGTTCCTAACCGTGGGCTGCGACAGTTATGGCTATCTCAACAGTGTTTACGAGGAGCACACATATACAACTGGGTGCTTGACAAGATGCTATGGCAATAGAATAATGTCAATAACCAAAAACGGAACTTGTTCAGGCTTAGGGTGTTGCCAGGTCGACATTCCTCCGAGAATGAGGAATATCACTGTAGAAGCATCTGGCTTTCCCAATTCAACGGAATCGTTGGGAACCTGCACCTATTCATTTGTTGTTAAGCAAGGCTCGTATAATTTTTCTACCACTGATTTACAAGGTTTTCCTCACACAGAATTCCCCTTGGTTCTTGATTGGACTGTAGGAAACAAGGGCTGCAATGCTTCAAAGAGTGGTACCGACTACGCGTGCAAGAACAATAGTCTTTGCGTTGATGAGGACATAGATTATGGTTACCGTTGCACATGTATGTCAGGTTATGAAGGAAACCCATACCATCCTGATGGCTGCATAGATATTGATGAGTGTAAGAGGCCGGGTCATACGTGCATAGATGAAAATCACTGTCGGAACATCAATGGGTCTTACCAATGCTTTTGTCCTAAGGGGCAATCAGGAGATGGAACTGAGAAAAGAGGGTGCCACAAACAGGAAGTACTTACCAAAGTTATAATTGGAGCAGGTGCAGGGCTTATTATTCTATTAGTGGGGATTGCCTCCATGTACTTACTATACCAGAAAAGGAAACTAATGAAGCTAAAAGAGAAATTCTTCCGTGAGAATGGGGGTTTCATTTTGCAACAAAAACTCCATGCAAGAGAAGATTCCTCCCAAACAGCTAAAATTTTCACAGAAGATGAACTCAAGAAGGCCACCAACAACTATGACGAGAGCTTAATCATTGGTAGAGGAGGTTATGGCATAGTTTTCAAGGGAATTCTACCAGATAAACGGATCGTTGCAATCAAGAAATCCAAAATAGTAGATAAGAGTCAAATCGACCAATTCATTAATGAGGTGGTTGTTCTGTCCCAAATCATTCACAGAAATGTGGTCAAACTCTTGGGATGTTGTTTGGAGACTGAAGTTCCTTTACTAGTTTACGAGTATGTCAGCAATGGTACCCTTCATGATTTTATTCACAATGGAGGCAAGGAAGAAAATGTAACATGGAAAACTCGTTTAAGGATAGCAGCAGAGGCAGCTGGAGCTCTGTCATATCTACACTCGGATGCCTTTGTACCCATTATCCACAGAGATGTAAAGGGTGCCAACATTCTCTTGGATGACACTTACAGAGCCAAAGTGTCAGATTTTGGAGCTTCAAAATTGGTTCCACTTGACCAAGCTGATATAGCCACAATGGTGCAGGGAACTCTTGGATACTTAGACCCAGAGTATATGCAATCACAACAATTGACAGAGAAAAGTGACGTTTATAGCTTTGGGGTAGTGCTTGTAGAGCTGCTAACAGGGGAGAAACCTATTTCTTTTGACAGGCCAGAAGAGAAAAGAAGCCTAGCTATGCATTTTCTATCTTGCTTGAAAGAGGACCGCATGTTTGATGTTGTTCAAGCTGGAATCATGAATGAGGAAAATAAGCAAGAGATAAAGGAGGTTGCTGTTCTTGCAGCAAAGTGTTTGAGACTTAGAGGCGAGGAAAGACCAAGCATGAAGGAAGTGGCTATAGAGTTGGAGGGATTAAGGCTAATGGAGAAGCACCCCTGGACAAGTAGAGAACAAGATTTGGAGGAGACTCGATACTTGCTTCACGAGGAAGCTTCAAACATTTATTATGAATGCGGTGATAACAGCAGCCTTCAGAATACCGGGTATGATACCAGTAGGGATCATGTGCCGCTGGTTGCCTTGCATGGTGGAAGATGA 2283 0.4279 MEVKVKQLQLHLMLMAELALALVVAVAAGEATSSVAAATKVQSLPGCNSTCGDVTNIPYPFGIGNSSSKPDQPCYLKHKFRLHCNDSKLYFGNVPVLAIAIEGQMDVMLDISSKCYRKNGSNYWSNPWLYTASFSISSTENKFLTVGCDSYGYLNSVYEEHTYTTGCLTRCYGNRIMSITKNGTCSGLGCCQVDIPPRMRNITVEASGFPNSTESLGTCTYSFVVKQGSYNFSTTDLQGFPHTEFPLVLDWTVGNKGCNASKSGTDYACKNNSLCVDEDIDYGYRCTCMSGYEGNPYHPDGCIDIDECKRPGHTCIDENHCRNINGSYQCFCPKGQSGDGTEKRGCHKQEVLTKVIIGAGAGLIILLVGIASMYLLYQKRKLMKLKEKFFRENGGFILQQKLHAREDSSQTAKIFTEDELKKATNNYDESLIIGRGGYGIVFKGILPDKRIVAIKKSKIVDKSQIDQFINEVVVLSQIIHRNVVKLLGCCLETEVPLLVYEYVSNGTLHDFIHNGGKEENVTWKTRLRIAAEAAGALSYLHSDAFVPIIHRDVKGANILLDDTYRAKVSDFGASKLVPLDQADIATMVQGTLGYLDPEYMQSQQLTEKSDVYSFGVVLVELLTGEKPISFDRPEEKRSLAMHFLSCLKEDRMFDVVQAGIMNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAIELEGLRLMEKHPWTSREQDLEETRYLLHEEASNIYYECGDNSSLQNTGYDTSRDHVPLVALHGGR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5791 760 Pfam Wall-associated receptor kinase galacturonan-binding 47 104 IPR025287 GO:0030247
Lja1g5791 760 Gene3D Laminin 256 306 - -
Lja1g5791 760 ProSitePatterns Calcium-binding EGF-like domain signature. 304 330 IPR018097 GO:0005509
Lja1g5791 760 ProSiteProfiles Protein kinase domain profile. 427 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5791 760 SUPERFAMILY EGF/Laminin 303 341 - -
Lja1g5791 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Lja1g5791 760 Gene3D Laminin 307 346 - -
Lja1g5791 760 Pfam Protein kinase domain 429 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5791 760 Pfam Calcium-binding EGF domain 304 341 IPR001881 GO:0005509
Lja1g5791 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 25 727 - -
Lja1g5791 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 727 IPR045274 GO:0007166
Lja1g5791 760 SUPERFAMILY Protein kinase-like (PK-like) 409 697 IPR011009 -
Lja1g5791 760 SMART egfca_6 304 347 IPR001881 GO:0005509
Lja1g5791 760 SMART serkin_6 427 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5791 760 ProSitePatterns Protein kinases ATP-binding region signature. 433 456 IPR017441 GO:0005524
Lja1g5791 760 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 321 332 IPR000152 -
Lja1g5791 760 Pfam Wall-associated kinase 183 288 IPR013695 GO:0004674|GO:0016021
Lja1g5791 760 Gene3D Phosphorylase Kinase; domain 1 398 502 - -
Lja1g5791 760 SMART egf_5 307 347 IPR000742 -
Lja1g5791 760 SMART egf_5 257 303 IPR000742 -
Lja1g5791 760 Gene3D Transferase(Phosphotransferase) domain 1 503 724 - -
Lja1g5791 760 ProSiteProfiles EGF-like domain profile. 304 342 IPR000742 -
Lja1g5791 760 CDD STKc_IRAK 433 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5791 Lja-Chr1 103389736 103392322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5791 40 760 Receptor kinase-like Gene Family AT1G21230 45.109 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lja1g5791 Pkinase 8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5791 - - gmx:106795446 977.237