Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5789 ATGGCTTCCTCAACACCACTCAGCCGAAGAAGAACCCGCGCCCCCAAACCCTCACGCCGCCGCCACCACGACTCCGACTCCGACTCCGACGTCGTCTGCATCGAGTGCGGCTCCGGCGAGTACCCAGCCGAGCTGCTCCTCTGCGACAAATGCGACCGCGGCTGCCACCTCTTCTGCCACCGACCCATCCTCGTTTCTGTCCCTAAAGGCTCTTGGTTTTGCCCCTCTTGCTCCCATGACAAACCCAAATCTTTTCCTCTTGTGCAGACCAAAATCATTGATTTCTTCCGAATTCAACGATCGCAGGATGCTCCCGCGGTGTCGAATCAAGATTCCCGGAAGAAGCGAAAGCGTAGCAGCTTGTCCGTGTCGAAGAAGAAGCGGAAGCTGCTGCCATTCGTCCCTAGTGAGGACCCTCAAAGGAGATTGGAGCAGATGGCGTCGCTTGCGACGGCGTTGACGGCAACTAAAGCAGAATTCAGCAATGAGCTTAGTTACATGCCTGGAATGGCACCGAGGTCTGCTAACTGTGCTGATTTGGAGCATGGGGGAATGCAGGTCATGTCAAAAGAAGACTCCGAGACTTTAAACTTGTGCAAAAGTATGACAGAAAGAGGAGAATGGCCACCCCTCATGGTTGTTTTTGATCCTGTAGAAGGGTTCACTGTAGAAGCTGATAGATCCATAAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGATTTTTTGAAGAATAGGGAAAATGATGGTGGGGATAGCATTATGACTCTTCTTTCAGCTTCTGATCCTTCACAAACACTTGTCATCTGTCCAGACAAACGTAGCAACATAGCACGTTTCATTAATGGCATTAACAACCACACACCGGAAGGAAAAAAGAAGCAGAATTTAAAGTGTGTGAGATTTGATGTTGATGGTGAATGCCGGGCTCTTTTAATTGCTAACAGAGATATACGAAAAGGGGAGAGATTATACTATGACTACAATGGCCTTGAACATGAATATCCAACTCAACATTTTGTCTAA 1032 0.4797 MASSTPLSRRRTRAPKPSRRRHHDSDSDSDVVCIECGSGEYPAELLLCDKCDRGCHLFCHRPILVSVPKGSWFCPSCSHDKPKSFPLVQTKIIDFFRIQRSQDAPAVSNQDSRKKRKRSSLSVSKKKRKLLPFVPSEDPQRRLEQMASLATALTATKAEFSNELSYMPGMAPRSANCADLEHGGMQVMSKEDSETLNLCKSMTERGEWPPLMVVFDPVEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDGGDSIMTLLSASDPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVDGECRALLIANRDIRKGERLYYDYNGLEHEYPTQHFV* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5789 343 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g5789 343 SMART PHD_3 32 78 IPR001965 -
Lja1g5789 343 ProSiteProfiles SET domain profile. 209 331 IPR001214 GO:0005515
Lja1g5789 343 MobiDBLite consensus disorder prediction 104 125 - -
Lja1g5789 343 SUPERFAMILY SET domain 201 331 IPR046341 -
Lja1g5789 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 93 IPR013083 -
Lja1g5789 343 PANTHER HISTONE ACETYLTRANSFERASE 7 340 - -
Lja1g5789 343 SUPERFAMILY FYVE/PHD zinc finger 22 84 IPR011011 -
Lja1g5789 343 ProSiteProfiles Zinc finger PHD-type profile. 30 80 IPR019787 -
Lja1g5789 343 CDD SET_ATXR5_6-like 206 343 - -
Lja1g5789 343 Gene3D SET domain 115 343 IPR046341 -
Lja1g5789 343 CDD PHD_BAZ2A_like 33 77 - -
Lja1g5789 343 Pfam PHD-finger 33 79 IPR019787 -
Lja1g5789 343 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 7 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5789 Lja-Chr1 103341941 103344533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5789 32 77 C2H2 Transcription Factor Family AT3G01460 45.652 1.23e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g5789 PHD 7.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5789 K24406 - gmx:100775247 521.931