Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5775 ATGGAGCAAGACTTTGTGCCTAGGGTTGAACTGCCTCACTTACAGGATAATACAACCCAATATTGTGATCAATCAGCACAGGAAGGGTCCCCAACATTGGTTAGTCAAATTGATGACACTGACATTTGGGTTGGCATGTCATTTAAATCTGCAGAGTGTGTGAAAGCTCATTATCGTCAATATGCTATGAAGAAAGGATTCGGTATGAAGGTGAGAAACTCAAAGAAAGGAACTGATGGCCAAATTAAATACAATATGTTTGCATGTGTTCGGGAAGGAAATTATGTGTCGTCCCTGCCAAATGATTTGAAAACAAACCCAACAAGGAAAATTCAGTGTCCTGCAAAGATTTGTACATCGGTACACAAAGATGGGCTTTGGTACATTAACACATTTAATGATGACCATTGCCATGACTTGAGCCCCGGAAAATCTAGGATGTTCGAAGGTAATAGAAGAATAAGCATGCATGTTAAGCGGACTATTCAGATTAATGATGATGCAGTGCAAGCTGAATTTCGAGCAAAGATGAATTGTTATGTCTGTAGCATCACCATTGACTCGCCAATTTGCATATATGAAGTAATGGAAGAAATGCATGTGGTTGGGCGTCTAAAGGAAGGAGTCTTTCGAGTCGTCTTCAATCGTAATGACCATGACATCAAGTGCACATGCTTATTATTTCAATTTAGAGGAATAATATGTAGGCACTCACTTCAGGTACTTGCACAAGAAAGGGTCAAACAAGTACCTTCACGATATCTTTTGCCTAGGTGGAGCCAAAACATTCGACGGAATTATGCATACATCAAGTCAAGCTACCATGTTAAACAGCTGCAACCACAAACGCAAAGATTTGATGAATTGTGCAAGAAATTCTATAAGATTGCGGAGATTGCATGTGAGACAATTGATGCCACAGCACTTCTAGACAATACCATGCGTGGTATTCAAGATAAGGTGAAGGAGAAGGTGAAGGAAGCTGCTGCAAATACAAAAGGAAAAGGCCACCATCAAGGTGACGCAGCGAGACCAGTGCAAGCTAATTTAGGTGTGTCACTTTCAGCAGATCAAGTGAACATTCACAGTCCTATAACAAAGCCACGTAGGGGAAGACCGCCATCAAAGAGAAAAATGTCAACTACAGAACAAGTAATAAGGAAAAAGAGGACAAAGAATAATCAACAAGCAATAGTCACAGATCACATTGTAGGAATGGCCAGTCAAGAATGCGAATCAAGCCTTCACATGGGACATAGAACAGATGACATTGATAGTGGAGGATTTGAACAACCTCATAGCGTGTTGACAGGTGTAAATGGCAGCAGAAATGACGGCGTATATTTACAAAATTGTTCGGCTTCCGAACTGTCAGATGGTCATGCAACTAGCTTTTTATCATTACTAGAAGCTGATGAGGGTCCTTCCTACAATTATTTAGACAGTCAGTCTACAGTGACCTCACATGCATCTCAGTTTCCTTACTTCATAGGTGTGGACGGTCATTTTGTTACAATTACTAATGTTACTAATGAATGA 1539 0.4035 MEQDFVPRVELPHLQDNTTQYCDQSAQEGSPTLVSQIDDTDIWVGMSFKSAECVKAHYRQYAMKKGFGMKVRNSKKGTDGQIKYNMFACVREGNYVSSLPNDLKTNPTRKIQCPAKICTSVHKDGLWYINTFNDDHCHDLSPGKSRMFEGNRRISMHVKRTIQINDDAVQAEFRAKMNCYVCSITIDSPICIYEVMEEMHVVGRLKEGVFRVVFNRNDHDIKCTCLLFQFRGIICRHSLQVLAQERVKQVPSRYLLPRWSQNIRRNYAYIKSSYHVKQLQPQTQRFDELCKKFYKIAEIACETIDATALLDNTMRGIQDKVKEKVKEAAANTKGKGHHQGDAARPVQANLGVSLSADQVNIHSPITKPRRGRPPSKRKMSTTEQVIRKKRTKNNQQAIVTDHIVGMASQECESSLHMGHRTDDIDSGGFEQPHSVLTGVNGSRNDGVYLQNCSASELSDGHATSFLSLLEADEGPSYNYLDSQSTVTSHASQFPYFIGVDGHFVTITNVTNE* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5775 512 Pfam FAR1 DNA-binding domain 57 141 IPR004330 -
Lja1g5775 512 MobiDBLite consensus disorder prediction 363 390 - -
Lja1g5775 512 ProSiteProfiles Zinc finger SWIM-type profile. 210 246 IPR007527 GO:0008270
Lja1g5775 512 Pfam SWIM zinc finger 220 239 IPR007527 GO:0008270
Lja1g5775 512 PANTHER OS03G0843700 PROTEIN 169 299 - -
Lja1g5775 512 PANTHER OS03G0843700 PROTEIN 31 153 - -
Lja1g5775 512 SMART 26again6 221 248 IPR006564 GO:0008270
Lja1g5775 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 169 299 IPR031052 GO:0006355
Lja1g5775 512 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 153 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5775 Lja-Chr1 102854594 102857584 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g5775 FAR1 7e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5775 - - vra:106770271 181.03