Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5773 ATGTCACTGGTTATATCGGCAGAGCTTGCTGATACATCATATAGGAATGCCAAGCTCTACACAATAAAGGGAACCGATGTGAAACCTGGCTTATCCTCCAATAATTTTGTACCTGATAAGCACAGAAACATGTACATGACAGATTCATATTCCAGAGAGAGTTATGAAAAGTATTTCCTGGATTCACCAACAGAAGAACTGACATCAAGTTCCAGCATATCAGTAAATTCAATTCACCATGATGCTGCTTCTTCTTACCAGCTCAGGGCTAGTCCAGGAGCTTCTATGGTTTCTGATAAACCATTTGATACTTCTCTCATGTCTACAAGGAATCATGATGCCTATGAGTCCGACTTCGTATCAGATTTCTTGGATCATGAAAGCCCGGATTACCTTGAAGTTGATGGTGAAATGCGATTAAAACTACAAGAGTTGGAGAGGGCGTTGCTTGGTGATAATAATGATGACGAGGATGAGGGAGAGGAAGAAGAAGAGGAGGACATGTTTGGTACTTTCCAAAGCATGGAGATTGATGATCCTGACATAGCTGTGTGGGCCGACGCTGATCCCATTCAGAACATGCTGCTCCATGACCATGACTCACCAAAGGAATCTTCATCCTCAGATTCCAACATTAGCAGCATCAGCAGCACCACCAAAGAAACATCTCAATTTCAAAACTCTCCTCAGACCCCGAAGCAATTGCTTTATGAATGTGCTAGTGCTCTTTCAGAAGGAAATAAAGTGAAAGCCTCATCTATGATAAATGATCTCAGGCAGATGGTCTCAATTCAAGGAGATCCTTCCCAAAGAATTGCAGCATATATGGTGGAAGGCCTCGCGGCTCGCTTGGCTTCATCCGGAAAATGTATATACAGAGCTTTGAAATGCAAGGAGCCTCCTTCTTCAGACCGTCTCGCAGCAATGCAGATACTATTCGAGGTCTGCCCGTGTTTTAAATTTGGATTCATCGCTGCGAATGGTGCCATTGCAGAGGCTGTGAAGAATGAAAAGAAGGTTCACATCATAGATTTTGACATCAACCAAGGAAGTCAATACATAACTCTAATACAAACACTTGCTTCAAGGCCAGGCAAGCCACCCCATGTGAGATTGACCGGGGTTGACGATCCTGAGTCCGTGCAGCGATCTGTCGGAGGCTTAAACAACATAGGACAAAGGCTCGAAAAGCTTGCAGAAGCACTTGGGTTGCCGTTTGAGTTTCGAGCTGTGGCATCAACTACTTCTCTTGTCACCCAATCAATGCTCAACTGTCGCCAAGGGGAAGCTCTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCGAGATGAGAGCGTGTCAACAGTGAACGAACGGGACCAGCTCCTTCGCATGGTGAAGAGCCTGAATCCAAAACTTGTGACGGTTGTGGAGCAGGACATGAACACTAACACCTCTCCTTTTCTGCCGAGATTCATTATAGCGTACGAATACTACTCTGCTGTGTTCGACTCGCTTGATGCCACTCTTCCTAGAGAGAGCCAGGACAGGGTGAATGTGGAAAGGCAGTGTTTGGCGAGGGACATTGTTAATATTGTCGCGTGTGAGGGCGAGGATCGGATAGAGAGGTATGAAGTTGCTGGGAAATGGAGAGCAAGGATGACAATGGCCGGGTTCAATTCTTCCCCTATGAGCACAAATGTGAAGGAAGCAATCAGGGAACTCATTAAGCAGTACTGTGACAGGTACAAGATGAAGGATGAAATGGGGGCACTTCATTTTGGGTGGGAAGACAAGAACTTGATTGTTGCTTCAGCATGGAAGTGA 1809 0.4538 MSLVISAELADTSYRNAKLYTIKGTDVKPGLSSNNFVPDKHRNMYMTDSYSRESYEKYFLDSPTEELTSSSSISVNSIHHDAASSYQLRASPGASMVSDKPFDTSLMSTRNHDAYESDFVSDFLDHESPDYLEVDGEMRLKLQELERALLGDNNDDEDEGEEEEEEDMFGTFQSMEIDDPDIAVWADADPIQNMLLHDHDSPKESSSSDSNISSISSTTKETSQFQNSPQTPKQLLYECASALSEGNKVKASSMINDLRQMVSIQGDPSQRIAAYMVEGLAARLASSGKCIYRALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAIAEAVKNEKKVHIIDFDINQGSQYITLIQTLASRPGKPPHVRLTGVDDPESVQRSVGGLNNIGQRLEKLAEALGLPFEFRAVASTTSLVTQSMLNCRQGEALVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFIIAYEYYSAVFDSLDATLPRESQDRVNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMTMAGFNSSPMSTNVKEAIRELIKQYCDRYKMKDEMGALHFGWEDKNLIVASAWK* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5773 602 ProSiteProfiles GRAS family profile. 223 602 IPR005202 -
Lja1g5773 602 Pfam GRAS domain family 233 602 IPR005202 -
Lja1g5773 602 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 601 IPR005202 -
Lja1g5773 602 MobiDBLite consensus disorder prediction 206 231 - -
Lja1g5773 602 MobiDBLite consensus disorder prediction 151 168 - -
Lja1g5773 602 MobiDBLite consensus disorder prediction 147 168 - -
Lja1g5773 602 MobiDBLite consensus disorder prediction 195 231 - -
Lja1g5773 602 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 10 601 IPR030011 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5773 Lja-Chr1 102666561 102670522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5773 1 602 GRAS Transcription Factor Family AT1G21450 61.851 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja1g5773 GRAS 9.2e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5773 - - lja:Lj0g3v0277879.2 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5773 1 102666561 102670522 Lja1g4942 1 68291193 68295045 PCT