Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5772 ATGGATTCTTCGGAGGCGAATACTGAATCCCCTAGTCGCGCCGAACAGGATTCCACGGCGAACAAGAAATGCACCAAGTTCTACGATATCTACGGCCCCGAAGGCAAGGCCGATGTTGTTTTCAAGTCACCAGAAGATAATTCAACTTTGAATCTTAATGATATTCAAGGACTTATAACTTGGGTGCTTGGTGAAGGATTTATGCCATCATGGGTCTTTATTAAGAATAAACCTCTTATTCCCAAAGTGATGATGCTATATATGCCAGGCTTGGATGCAGCTTTGTTCTTGTCGCAATCTAAAATGCTTCCCAGTCTAAAAAAATTCTGTGGCAAACCAAGGCCAGTCCTAGCTCTTAGCTGTGTATCAGATGGTATGCAGACAATAGATGCACTGCTAACATGCAAGGTGAAAAGAAAGAGGGATGAAAATTGTTCAATTATGACGAAAGCTACTCTGACACCACAACAAGAAGATGGCTGTGTTGGTACTAACAGTCTATCATATATGGAGCTAACTAAAGATATACCTTTCCCTGTTACGTACTATACACTAACAGAGAAAGATCTGGAAGAGAATGGATATTCTATTAATAAGCCAGGTTTTCTTTCTACTTTGCCTGCTCCTTTGGGATCTCCTTTTCATGAAATGTTAGCAGTTGATTGTGAGATGTGTGTAACAAGCGAGGGTTTTGAGCTGACAAGAGTTACTCTGGTAGATGTTAAAGGGCAGGTTTTGATAGATAAGTTAGTTAAACCAACGAATGCTATCACTGATTACAACACAAGATTTAGTGGAATAACATATGAGATGTTAGATGGGGTGACAACAAGTTTGAGAGATATTCAGGAAGAGTTTCTAAAATTGGTTTACAAAGAGACTATCCTCGTTGGCCACTCTTTAGAAAATGATTTATTAGCGTTGAAAATATCCCATGACTTGGTCATTGACACAGCAGTATTATACAAACACCCACGAGGGTCATCTCATAAAACTGCTCTACGGTTTCTTGCTAAAAGATTTCTTAAAAGGGAGATACAGCAGTCAGGGAATGGGCATGACAGCATTGAAGATGCTAGAGCTACCTTGGAATTGGCTCTATTGAAGATAAAAAATGGGCCTGACTTTGGTTCCCCTCCTAACTTCATGCGGAAAAAGCTCCTTTCCATTTTGAGCGAATCTGGCAAAACTTCCTCATTGATTGATGATATATCCGTTGTAAAACGATTTGCCTCTGAGTCCTCTCATGCAATTCCAGTTACATCTGATGAAGAAGCACTTGCAAAGACAACCAAGGAGTTGAAGAATGAAAAGGTCCATTTTATTTGGACACAGTTTTCAGAGTTATACTCATACTTGAAGAAACAAGCTGAGGATTCAGAGAAACTGCATAAAAGACTTGCAGAGATGATGGCATTACGAACGTGTGAGAAAGGGAAAGGCTTCAAGTACAATGCATCTTCCGAACTGAAGGAAATTCTAGCTCGCATGGATGCTAGAATTCGTAATCTGTACATGTCATTACCAACAAATGCTATGGTGATAATTTGCACTGGTCACGGAGACACAGCAGTTGTTCGCAGGGTGAGGAGAATGCTTGCTGAGGACAGTGAAAGTAATTTTAGTCGTGAGAAGATCGTGGAACTCCTGGAAGAGTTTCAGGCGAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAGCACTGA 1707 0.4054 MDSSEANTESPSRAEQDSTANKKCTKFYDIYGPEGKADVVFKSPEDNSTLNLNDIQGLITWVLGEGFMPSWVFIKNKPLIPKVMMLYMPGLDAALFLSQSKMLPSLKKFCGKPRPVLALSCVSDGMQTIDALLTCKVKRKRDENCSIMTKATLTPQQEDGCVGTNSLSYMELTKDIPFPVTYYTLTEKDLEENGYSINKPGFLSTLPAPLGSPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSILSESGKTSSLIDDISVVKRFASESSHAIPVTSDEEALAKTTKELKNEKVHFIWTQFSELYSYLKKQAEDSEKLHKRLAEMMALRTCEKGKGFKYNASSELKEILARMDARIRNLYMSLPTNAMVIICTGHGDTAVVRRVRRMLAEDSESNFSREKIVELLEEFQARAEVALCFVGVKH* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5772 568 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 10 553 - -
Lja1g5772 568 SMART exoiiiendus 216 375 IPR013520 -
Lja1g5772 568 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5772 568 Pfam Exonuclease 219 365 IPR013520 -
Lja1g5772 568 PANTHER LD29573P 10 553 - -
Lja1g5772 568 Gene3D - 214 375 IPR036397 GO:0003676
Lja1g5772 568 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
Lja1g5772 568 CDD REX1_like 218 367 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5772 Lja-Chr1 102654288 102665627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5772 217 365 C2H2 Transcription Factor Family AT5G40310 28.313 7.55e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5772 K14570 - gmx:100802793 965.296