Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5771 ATGTCTCGAACGCTGGTGCAACCGATAGGTCAGAAGAGGCTAACGAACGTGGCGGTGGTGCGTCTCAAGAAGCACGGCAACCGCTTCGAAATCGCCTGCTATCCGAACACCGTCCTTTCTTGGCGTTCCGGCGTCGAGAAGGACATCGATGAAGTCTTGCAGTCTCACACCGTTTATTCCAATGTTTCCAAAGGAGTTCTTGCCAAGTCTAAGGATTTGATCGCTGCTTTTGGAACCGATGATCACTCCGCCATATGCTTAGAGATTTTGAAGAAGGGGGAGCTTCAGGTTGCTGGCAAAGAGAGGGAGTCATTGCTGTCGAGTCAGTTTAGGGACATTGCCACCATTGTCATGCACAAGACTTACAATCCGGAGACTCAGCGCCCTTACACCATCAGCATGATTGAACGCCTTATGAGGGAAATCCATTTTGCTGTTGATCCACACAGCACTTCCAAGAAGCAGGCTTTGGAGTTGATTCACGAGCTTCAAAAGCATTTCCCTATAAAAAGGTGTCCATTAAGAATACGAGCTGCTGCTCCGGAGGACCAAGTGTCTGCCCTTTTGGAGAAGCTGAATGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGTTCTGCTGCTCAGTTATCTGTTATTTTTGAGTTGGAACCTGGTCTATATAAGGACTGTCATGACTTCATAATGGATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTACGTGGAGGGGGATACCCAAGTGGATCAATACAATGATGATGAGGATATGCATGCACCATTGTCCAAAGAAACTAGTGAATCTGTGCTTGAGCTGAATGATAAACTTGAAAAGCAAACAATTTCATCTACGAGTAAGCCAACAGAGGGGCAGCAATCAAAGCAAAACAAGTGCAACACATGTAATGTTTCATTTGAAGACTCTAAGCTGTACAGGGAACACCACAAGACTGATTGGCACAAACACAATATGAAGCGCAAGACAAGGCAACTCCCACCACTTACCGAAGAAGAGTGCACGGCAGACATGGAACTGGGTGACTCAAAATCTGATTTAAAGGATTACTCATTTTGA 1080 0.4546 MSRTLVQPIGQKRLTNVAVVRLKKHGNRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDHSAICLEILKKGELQVAGKERESLLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELIHELQKHFPIKRCPLRIRAAAPEDQVSALLEKLNEWKATVISKEGSAAQLSVIFELEPGLYKDCHDFIMDKMHGRFEVLAHSLYVEGDTQVDQYNDDEDMHAPLSKETSESVLELNDKLEKQTISSTSKPTEGQQSKQNKCNTCNVSFEDSKLYREHHKTDWHKHNMKRKTRQLPPLTEEECTADMELGDSKSDLKDYSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5771 359 Gene3D - 1 96 IPR036786 -
Lja1g5771 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Lja1g5771 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Lja1g5771 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Lja1g5771 359 SUPERFAMILY beta-beta-alpha zinc fingers 293 344 IPR036236 -
Lja1g5771 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Lja1g5771 359 MobiDBLite consensus disorder prediction 344 359 - -
Lja1g5771 359 Gene3D - 174 251 - -
Lja1g5771 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Lja1g5771 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Lja1g5771 359 Gene3D Classic Zinc Finger 287 348 - -
Lja1g5771 359 MobiDBLite consensus disorder prediction 322 359 - -
Lja1g5771 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Lja1g5771 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Lja1g5771 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Lja1g5771 359 Gene3D - 100 172 IPR037188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5771 Lja-Chr1 102644087 102647161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5771 28 359 C2H2 Transcription Factor Family AT1G43860 58.721 7.79e-144 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g5771 SBDS_C 1.6e-26 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5771 K14574 - gmx:100797497 651.358