Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5755 ATGCATTGTGGTAGAAACCTGCAGTCCAACGGGTTGACTGGTACGCTGCCTCCAGAGCTTGGAAATTTGAGATACCTTCAAGAGCTTCGGCTGGATAGGAATAAGCTTCAGGGATCTGTTCCTGCTGGTGGCAGTTCGAACTATGATTCAAATAAGAATGGGATGTATGCATCAGAGGAGAATATAACTGGCTTCTGTAATTCGTCTCAATTAAAAGTAGCAGACTTTTCATATAATTTCTTAGTTGGTAGCATACCAAAATGCTTGGAGAATCTTCAAATTTTAAGCTATCAAGGGAACTGCCTGCAGAGCAAGGACATCAAGCAACGGCCTTCGATGCAATGCGCTGGTGCTTCACCTGCCAAGAGTCAGCCAGTGGTGAACCCAAACCACCAACCTGTTGAACATATGCCCAAGCATCATGGATCATCAAAACCTTCTTGGCTTTTAGCCATAGAAATAGTAATGGGAACTATGGTCGGTTCTCTCTTTCTGGTTGCTGTTCTCGCTGCTTTCCATAGGTGTAACAAAAAATCAGCTATCATTATTCCTTGGAAAAAATCTGCAAGCCAGAAAGATCATATTACAGTTTATATAGACCCTGAGATGTTAAAGGATGTGAGAAGGTATAGCAGACAAGATCTTGAAGTGGCATGTGAAGACTTCAGCAACATAATAGGGTCCTCACCAGACACTGTGGTCTACAAGGAGACCATGAAAGGTGGGCCTGAGATTGCTGTAATTTCCCTCTGCATTAGGGAGGAGCAATGGACAGGGTACCTTGAACTCTATTTTCAGAGAGAGGTGGCAGAATTGGCTAGGCTAAATCATGAGAATACTGGAAAATTACTGGGGTATTGTAGAGAGAGCACTTCGTTTACAAGGATGTTGGTTTTTTATTATGCTTTAAATGGGACACTTCATGAGCACCTACATTGTTGTAAGTCAACTAATTTCCCTAGCTATTGTATAGATTTTAACTGTTCCAAAGGATGCCAGTTCTCTTGGACACGACGTATGAATATTGCTATAGGCATTGCACGCGGACTCAGATATTTGCACACAGAAGTTGAACCTCCATTCACTATCTCAGAGCTGAATTCTAATGTTGTATACCTTACAGACGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAGAAGAATTCTGGTTCAATTAGCAGCCAAGGTGCTGTTTGTGTTCTTCCAAACTCCCTTGAGGCGCGCCATCTTGATATCCAAGGCAATGTTCATGCTTTTGGGGTACTCCTACTAGAGGTAATCAGCGGGAGGCCTCCATACTGTAAGGACAAAGGGTACTTAGTGGCCTGGGCCAAGCAGTATCTTGAAATGCCCGAAGTAATGTCACATTTGGTTGATCCGGAATTGAAAAACTTCAAACATGATGACCTCAAAGTGATATGCGAGGTAGTACGTCTTTGTATCAATCCTGATGCAACTGCACGTCCATCTATGCGAGAATTATGTAGCATGCTGGAGAGCATAATCGACACATCAGTAAGCGTGGATCTCAAGTCATCATCTCTGGCTTGGGCAGAACTAGCACTTCTATCATAA 1602 0.4263 MHCGRNLQSNGLTGTLPPELGNLRYLQELRLDRNKLQGSVPAGGSSNYDSNKNGMYASEENITGFCNSSQLKVADFSYNFLVGSIPKCLENLQILSYQGNCLQSKDIKQRPSMQCAGASPAKSQPVVNPNHQPVEHMPKHHGSSKPSWLLAIEIVMGTMVGSLFLVAVLAAFHRCNKKSAIIIPWKKSASQKDHITVYIDPEMLKDVRRYSRQDLEVACEDFSNIIGSSPDTVVYKETMKGGPEIAVISLCIREEQWTGYLELYFQREVAELARLNHENTGKLLGYCRESTSFTRMLVFYYALNGTLHEHLHCCKSTNFPSYCIDFNCSKGCQFSWTRRMNIAIGIARGLRYLHTEVEPPFTISELNSNVVYLTDEFSPKLVDFESWKTILERSEKNSGSISSQGAVCVLPNSLEARHLDIQGNVHAFGVLLLEVISGRPPYCKDKGYLVAWAKQYLEMPEVMSHLVDPELKNFKHDDLKVICEVVRLCINPDATARPSMRELCSMLESIIDTSVSVDLKSSSLAWAELALLS* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5755 533 Pfam Protein tyrosine and serine/threonine kinase 254 507 IPR001245 GO:0004672|GO:0006468
Lja1g5755 533 PANTHER PROTEIN MALE DISCOVERER 2 6 531 - -
Lja1g5755 533 Gene3D Transferase(Phosphotransferase) domain 1 303 523 - -
Lja1g5755 533 Gene3D Ribonuclease Inhibitor 6 124 IPR032675 -
Lja1g5755 533 ProSiteProfiles Protein kinase domain profile. 220 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5755 533 SUPERFAMILY Protein kinase-like (PK-like) 213 514 IPR011009 -
Lja1g5755 533 MobiDBLite consensus disorder prediction 115 141 - -
Lja1g5755 533 Gene3D Phosphorylase Kinase; domain 1 195 301 - -
Lja1g5755 533 SMART tyrkin_6 220 507 IPR020635 GO:0004713|GO:0006468
Lja1g5755 533 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 531 - -
Lja1g5755 533 MobiDBLite consensus disorder prediction 115 130 - -
Lja1g5755 533 SUPERFAMILY L domain-like 6 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5755 Lja-Chr1 102291909 102294967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5755 8 512 Receptor kinase-like Gene Family AT5G45780 26.628 3.79e-40 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lja1g5755 PK_Tyr_Ser-Thr 5.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5755 - - gmx:100794714 853.203