Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5754 ATGCCTCGTGGAACACTAGAAGTCATTCTTATCGGTGCAAAGGACCTTTATGACAAAGATTTTCTCAAAAAAATGGATCCTTACGTGATCCTCACATACCGGGCACAAGAGCACAAAAGTAGTGTGGCCAAAGGTGCAGGTTCTAATCCCAGTTGGAATGAGAGCTTCCTTTTCACCGTTTCTGACAATGCTTCTGAACTGATTCTGAGGTTTATGGACAAGGACACCTTTACCAAGGACGACTTTCTTGGCGAGGCAAAAATTTATTTGGAACCGGTGATTGCTGAAGGGAGCATTTCTGAAACTGCTTACAATGTTGTGAAGGAGCAGAAGTATTGTGGGGAGGTTAAGGTGGCTCTCACATTTTATCCTGAGAATTAG 381 0.4331 MPRGTLEVILIGAKDLYDKDFLKKMDPYVILTYRAQEHKSSVAKGAGSNPSWNESFLFTVSDNASELILRFMDKDTFTKDDFLGEAKIYLEPVIAEGSISETAYNVVKEQKYCGEVKVALTFYPEN* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5754 126 PANTHER C2 DOMAIN-CONTAINING 1 125 - -
Lja1g5754 126 Pfam C2 domain 4 104 IPR000008 -
Lja1g5754 126 Gene3D C2 domain 2 125 IPR035892 -
Lja1g5754 126 SMART C2_3c 5 102 IPR000008 -
Lja1g5754 126 PANTHER ELICITOR-RESPONSIVE-LIKE PROTEIN 1 125 - -
Lja1g5754 126 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lja1g5754 126 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5754 Lja-Chr1 102272477 102274810 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5754 4 94 C2H2 Transcription Factor Family AT4G21160 37.363 7.49e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5754 - - lja:Lj0g3v0123229.1 197.978