Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5753 ATGGAACATGTTATAGAACAAGGTGGTGATGCTGGTATGAAAATGGAAACTCTGGTTTCGAGTTTTCCGGAATCTGAAAGCAGAGTTGATCGAGGAACTTACTACAAACCTGTTTCTTTTCCAGGAAGGGTGACTGGTCCTACAAGACGATCAACAAAAGGAGGCTGGACCGAGCAGGAGGACAAACTTTTGACTTCTGCTGTGAAAGCGTTCAATGGAAAAAATTGGAGAAAGATAGCTGCATGTGTGCCAGGGAGAACAGATGTCCAATGCCTGCATCGTTGGCAGAAGGTTCTCAATCCTGAACTTATTAAAGGACCTTGGACAAAAGAGGAAGATGATCTAATACGTGAGCTTGTCATGACGAATGGGAAAAAGAACTGGTCTGAAATAGCGAAGGCCTTGCCTGGTCGGATAGGGAAGCAATGTAGGGAAAGGTGGCATAACCATTTAAATCCAGATATAAAAAGAACTGCATGGACCAAAGAAGAGGAGTTCACTCTTATTAAGGCTCACCAAATATATGGAAACCGATGGGCTGAAATAGCCAAGTTTCTGCATGGAAGGAGTGAGAACTCTATCAAGAATCATTGGAATTCCTCTGTGAAGAAAAAGGCCAATTTAAATGCCTCTATGTGTGCTCCACAGTGCAAATTTAATTTCAGTGAAGGTAAAATGACTATTTTAAAACAAAGCTCTGAGGAGACTCCTGAACCTGATCCTGAACCTGCCAATTTGGGTTTTGGAACTAAACTTCCAAGAGAAAATCATAGACAATATTTTGAATCCGCTATACTTGTCAGAAATGAAGCTGATCCACAACCTATAGCTTCCCGGAATGAAACAAGCAATGAAACTTGTAAGGGTGCTAGGCAAGTTCCTCTAGCAAAATTTGAAGGTAATGTCACAGGGGAAAGTATTGAAGCTTCAAAAAGCATGGGCAATAAATATCTTTCCCCATCATGCTACAAACCCCTTCAGCTTAAGGATTTGGACGTGCTTATGGCAACTAGCAAATTTGCAAGCACTGACAACCATATGCAAAGAAATACTTCATTACCTAATTCCTTTTACAATACCCCACCAAATTATGCAGAAGGAATATTTGTTAATTGTAAGAGCCCAGAAGATATATTGAGGACTGCAGCAAGGAGTTTTAAAAACACTCCATCTATCATGAGAAAAGAAAGGAGCCCCCGCAGGCTAGATTTTTCTCCTTGTGAAAAAAATTGA 1233 0.4063 MEHVIEQGGDAGMKMETLVSSFPESESRVDRGTYYKPVSFPGRVTGPTRRSTKGGWTEQEDKLLTSAVKAFNGKNWRKIAACVPGRTDVQCLHRWQKVLNPELIKGPWTKEEDDLIRELVMTNGKKNWSEIAKALPGRIGKQCRERWHNHLNPDIKRTAWTKEEEFTLIKAHQIYGNRWAEIAKFLHGRSENSIKNHWNSSVKKKANLNASMCAPQCKFNFSEGKMTILKQSSEETPEPDPEPANLGFGTKLPRENHRQYFESAILVRNEADPQPIASRNETSNETCKGARQVPLAKFEGNVTGESIEASKSMGNKYLSPSCYKPLQLKDLDVLMATSKFASTDNHMQRNTSLPNSFYNTPPNYAEGIFVNCKSPEDILRTAARSFKNTPSIMRKERSPRRLDFSPCEKN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5753 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 156 206 IPR017930 -
Lja1g5753 410 PANTHER MYB PROTEIN-RELATED 17 230 - -
Lja1g5753 410 Pfam Myb-like DNA-binding domain 108 168 - -
Lja1g5753 410 MobiDBLite consensus disorder prediction 230 251 - -
Lja1g5753 410 ProSiteProfiles Myb-like domain profile. 48 99 IPR001005 -
Lja1g5753 410 SUPERFAMILY Homeodomain-like 51 106 IPR009057 -
Lja1g5753 410 CDD SANT 56 99 IPR001005 -
Lja1g5753 410 Pfam Myb-like DNA-binding domain 53 99 IPR001005 -
Lja1g5753 410 ProSiteProfiles Myb-like domain profile. 100 151 IPR001005 -
Lja1g5753 410 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Lja1g5753 410 Gene3D - 104 156 - -
Lja1g5753 410 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 17 230 - -
Lja1g5753 410 Gene3D - 158 223 - -
Lja1g5753 410 CDD SANT 159 199 IPR001005 -
Lja1g5753 410 Gene3D - 52 102 - -
Lja1g5753 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 99 IPR017930 -
Lja1g5753 410 SMART sant 52 101 IPR001005 -
Lja1g5753 410 SMART sant 156 204 IPR001005 -
Lja1g5753 410 SMART sant 104 153 IPR001005 -
Lja1g5753 410 CDD SANT 107 151 IPR001005 -
Lja1g5753 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 155 IPR017930 -
Lja1g5753 410 SUPERFAMILY Homeodomain-like 102 198 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5753 Lja-Chr1 102225261 102229352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5753 43 397 MYB Transcription Factor Family AT5G02320 43.799 5.46e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g5753 Myb_DNA-bind_6 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5753 - - lja:Lj0g3v0160309.1 407.527