Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5751 ATGCCTCGTGGGACGCTAGAAGTCATTCTTATCGGAGCAAAGGACCTTCACGACAAAGAGTTTCTCAAGAAAATGGATCCTTATGTGATCCTCACGTACCGGGCACAGGAGCACAAAAGCAGTGTGGCCAAAGGTGCTGGTTCTAATCCCAGTTGGAATGAGAGCTTCCTTTTCACCGTTTCTGACAATGTTTATGAACTGAATCTGAGATTTATGGACAAGGACACTTTTACCAAGGACGACTTTCTTGGCGACGCAAAAATTCATTTGGAACCGGTATTTGCTGAAGGGAGCATTTCTGAAACTGCTTACAATGTTGTGAAGGAGCAGAAGTATTGTGGGGAGGTTAAGAAGGTGGGTGGGGTTGGTTGTGGTCGACGGTGA 384 0.4609 MPRGTLEVILIGAKDLHDKEFLKKMDPYVILTYRAQEHKSSVAKGAGSNPSWNESFLFTVSDNVYELNLRFMDKDTFTKDDFLGDAKIHLEPVFAEGSISETAYNVVKEQKYCGEVKKVGGVGCGRR* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5751 127 PANTHER C2 DOMAIN-CONTAINING 1 117 - -
Lja1g5751 127 Gene3D C2 domain 2 119 IPR035892 -
Lja1g5751 127 Pfam C2 domain 4 101 IPR000008 -
Lja1g5751 127 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lja1g5751 127 PANTHER ELICITOR-RESPONSIVE-LIKE PROTEIN 1 117 - -
Lja1g5751 127 SMART C2_3c 5 102 IPR000008 -
Lja1g5751 127 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 117 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5751 Lja-Chr1 102191471 102195180 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5751 4 97 C2H2 Transcription Factor Family AT4G21160 32.979 8.83e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5751 - - ahf:112794411 175.637