Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5746 ATGGATAAGAAGCAGCTAGACCTCTTGTTCATTTACTCTGCAGCAATTATGGTGGGAGCAATGTTCTTTAGTGTTGAAGCTGCACCAGTTGAAGATAAACAAGCTTTGCTTGATTTCCTTCACAACATTAATCACTCTAGTCACCTAAACTGGGGAAAGAGCTCTTCTGTATGCAAAAATTGGATAGGAGTTACTTGCAACACTGACCAATCCAGAGTTATAGCTCTTCAACTACCAAGAACAGGATTGAATGGTCCAATCCCACCCAACACACTTGATCGCCTCTCAGCACTCCAAACTCTTAATCTTGCATCAAACAATATAACTGGTTTTTTCCCTTTTGGTTTCTCTATGCTAAAGAATTTGAGCTATCTCTACCTCCAATTGAACAAAATTTCTGGTCCATTGCCATCAGATTTTTCAGTGTGGCACAATCTCACTGTTGCCAATTTTTCCCACAATTCTTTTAATGGGAGCATCCCCTTTTCATTGTCAATTTTGACTCATCTCAGTTCTTTAGCCCTAGACAACAACTTACTTTCAGGTGAAATTCCTGATCTCAATATTCTTACCCTGCAAGAGCTCAATTTGGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCCCTTCAGAGATTTCCTAGTTTGGCCTTTTCTGGTAACAATCTTACATCTGCACTTCCTCATCCAAGAAGGAAAAGAAAAAGACTTGGTGAACCAGCATTGTTGGGAATCATAATTGGTTGTTGCGTGCTGGGACTTGCTACGGCGATCGCAGCTTTCATGATCTTGTGTTGCTATCAGGGTCTTAAATTGCGATCTGCAGAACATGGTGAACAAGGAGGACTGAAGTTCAAGAAAAAGGAAGTCTCTGAGGAAAAAGAAGCTTCTGAGAGTAGACACAAGAACAAAGTTGTCTTCTTTGAGGGTTGCAGTCTCGCGTTCGACCTTGAGGACCTGTTGAGAGCATCAGCTGAGGTTCTTGGAAAGGGAACGCTTGGTACAGTGTACAAGGCTGCTCTAGAGGATGCGACAACCGTGGCGGTGAAGAGGTTGAAGGAGGTCACGGTTGGGAAACGAGAGTTTGAACAGCAGATGGAGATAGTAGGGAGTATTAGGCACGAGAATGTAGCTGCACTAAGGGCTTATTACTATTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTCTCAGCAATGTTGCATGGCAAAAGAGGGGTGAACAGAATCTGTTTAGACTGGGAAAGCAGGTTGAGAATAGCAATTGGTGCAGCAAGAGGTATTGCCCAAATCCATGCTCTACAAGGAGGAAAACTAATCCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCCAAAGAATACGGTTGTCTATCTGATACTGGTCTAGCAACATTGATGAGTCCAGCATCCGCACCAGCATTGCGAGCCACAGGGTACCGCGCACCGGAAGCAACCGATCCTCGAAAAGCAACACCGGCATCAGACGTGTTCAGTTTCGGGGTGCTGCTTCTCGAGCTTCTAACAGGGAAAAATCCCACAACACATGCCACAGGAGGTGAGGAGGTTTTCCACTTGGTTAGATGGGTAAGTTCTGTGGTTAGAGAGGAGTGGACTGGGGAAGTGTTTGATGTAGAATTACTGAGGTATCCAAATGTAGAGGAAGAAATGGTTGAGATGCTACAAATAGGGATGGCTTGTGTTGTGAGGATACCAGATCAGAGACCAACAATGGCAGAGGTGGTGAGAATGGTAGAGGAAATTCATCACACTGACACTGAATCTAGATCAGAATGTTCTACTCCAACTCCTCATGCAATTGAGACACCTTCTACGCCTCTTCCACATTGA 1869 0.4398 MDKKQLDLLFIYSAAIMVGAMFFSVEAAPVEDKQALLDFLHNINHSSHLNWGKSSSVCKNWIGVTCNTDQSRVIALQLPRTGLNGPIPPNTLDRLSALQTLNLASNNITGFFPFGFSMLKNLSYLYLQLNKISGPLPSDFSVWHNLTVANFSHNSFNGSIPFSLSILTHLSSLALDNNLLSGEIPDLNILTLQELNLANNNLSGVVPKSLQRFPSLAFSGNNLTSALPHPRRKRKRLGEPALLGIIIGCCVLGLATAIAAFMILCCYQGLKLRSAEHGEQGGLKFKKKEVSEEKEASESRHKNKVVFFEGCSLAFDLEDLLRASAEVLGKGTLGTVYKAALEDATTVAVKRLKEVTVGKREFEQQMEIVGSIRHENVAALRAYYYSKEEKLMVYDYYEQGSVSAMLHGKRGVNRICLDWESRLRIAIGAARGIAQIHALQGGKLIHGNIKASNIFLNSKEYGCLSDTGLATLMSPASAPALRATGYRAPEATDPRKATPASDVFSFGVLLLELLTGKNPTTHATGGEEVFHLVRWVSSVVREEWTGEVFDVELLRYPNVEEEMVEMLQIGMACVVRIPDQRPTMAEVVRMVEEIHHTDTESRSECSTPTPHAIETPSTPLPH* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5746 622 Gene3D Phosphorylase Kinase; domain 1 287 396 - -
Lja1g5746 622 PANTHER LRR RECEPTOR-LIKE KINASE 15 615 - -
Lja1g5746 622 PANTHER OS05G0588300 PROTEIN 15 615 - -
Lja1g5746 622 Gene3D Transferase(Phosphotransferase) domain 1 397 613 - -
Lja1g5746 622 SUPERFAMILY Protein kinase-like (PK-like) 326 592 IPR011009 -
Lja1g5746 622 ProSiteProfiles Protein kinase domain profile. 322 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5746 622 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Lja1g5746 622 Pfam Protein kinase domain 325 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5746 622 SUPERFAMILY L domain-like 44 228 - -
Lja1g5746 622 Gene3D Ribonuclease Inhibitor 30 237 IPR032675 -
Lja1g5746 622 Pfam Leucine rich repeat 87 132 IPR001611 GO:0005515
Lja1g5746 622 MobiDBLite consensus disorder prediction 595 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5746 Lja-Chr1 102039078 102042862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5746 21 619 Receptor kinase-like Gene Family AT4G23740 54.927 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g5746 Pkinase 8.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5746 - - aprc:113851984 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5746 1 102039078 102042862 Lja1g5746 1 102039078 102042862 ECH