Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5742 ATGGAACAACAACAACAACAAAACAACATGCTCTGTAAATACACAGAGCACCGAAACGTGACGAAGAAAATCATCACAAAGCCAAAGAAACAGAGCTTCAACGGTTTCGTTCCCACCGAGCCGAGAGTGGTTCGTGTGTCAGTTACAGATGCAGACGCCACCGACTCTTCCAGCGACGAAGAAGGACAGTCACGGTGTTCCCGGAGGCAGAGGGTGAAGCGCTATATCAACATGATTGAGATTGAACCTTCCTGCAAAACTGTCACCGCCGCCACGAAGAAGAGAAAGAGAGTTGCCGGAGAAACTGTTCCTTGTCGGCGGCCGGTGAAGGTTCTTCCGGCCAACGGAGGGAAAAAGTTTCGCGGCGTGCGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGAATAGCCGTGTCCGCGTCTGGCTGGGGACGTTCAACACCGCCGAGGAGGCTGCCATGCAGTACGACACCGCCGCCATCAGGCTCCGCGGTCCTGATGCTCTTACAAACTTCGTCACTCCTCCGGCGAGGGTGGAAGCGGAGGCGGAGGAAGCGGCGGCGGCAGTTAGAGCGGAGAAAACTGGATTGAATGTCGTCGTTGTCAAGCAGGACGACGCCTCTGGCTCCGGCTCCGGCAGCGATTCCGGCGACGAGAGCCGCCACGTGTCCTCGCCGACTTCGGTTCTCCGGTTCAGGAGGGAAGCAGAAACATTTGAACCGGAGAAACCGGTCGAACCGGAAGAGATGCGTGCTGATGCTGAACCGACTGAACTGGTTGAACCAGGTGAGTGCGGTTTGTTTAACGATATGCCGGCGTGGGATGAGGTGTTCCGTTTTCCATCAACGCCAGAATACGCCGTTATGTTTGATGAGCCTGCGCCGCACTTGGTTGACGAAACGACACCGTTTTTCTTAACTGAAGGTTTTAATGTTGACAAAACGCACTCTCCATCAATGTCATTGTGCCAGGTGGAGGATTTCTTCCAAGACATTTTGTTAAGCTCGGATCCTCTTGTGTTGCTGTGA 1038 0.5472 MEQQQQQNNMLCKYTEHRNVTKKIITKPKKQSFNGFVPTEPRVVRVSVTDADATDSSSDEEGQSRCSRRQRVKRYINMIEIEPSCKTVTAATKKRKRVAGETVPCRRPVKVLPANGGKKFRGVRQRPWGKWAAEIRDPNSRVRVWLGTFNTAEEAAMQYDTAAIRLRGPDALTNFVTPPARVEAEAEEAAAAVRAEKTGLNVVVVKQDDASGSGSGSDSGDESRHVSSPTSVLRFRREAETFEPEKPVEPEEMRADAEPTELVEPGECGLFNDMPAWDEVFRFPSTPEYAVMFDEPAPHLVDETTPFFLTEGFNVDKTHSPSMSLCQVEDFFQDILLSSDPLVLL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5742 345 MobiDBLite consensus disorder prediction 48 69 - -
Lja1g5742 345 SUPERFAMILY DNA-binding domain 119 176 IPR016177 GO:0003677
Lja1g5742 345 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 10 335 - -
Lja1g5742 345 MobiDBLite consensus disorder prediction 208 230 - -
Lja1g5742 345 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Lja1g5742 345 MobiDBLite consensus disorder prediction 236 260 - -
Lja1g5742 345 MobiDBLite consensus disorder prediction 207 260 - -
Lja1g5742 345 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Lja1g5742 345 CDD AP2 118 175 IPR001471 GO:0003700|GO:0006355
Lja1g5742 345 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Lja1g5742 345 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Lja1g5742 345 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Lja1g5742 345 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 335 - -
Lja1g5742 345 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5742 Lja-Chr1 101912952 101914225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5742 12 249 AP2-EREBP Transcription Factor Family AT4G27950 46.694 4.56e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g5742 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5742 - - lja:Lj0g3v0153129.1 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5742 1 101912952 101914225 Lja1g5742 1 101912952 101914225 ECH