Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5740 ATGGCGTTGGAAGTGCTTGAGGCACTAGATTCAGCTCGCACGCAATGGTACCATGTGACAGCCATAGTAATTGCCGGCATGGGCTTCTTCACCGATGCCTACGATCTCTTCTGCATCACCACAGTTTCAAAGCTCTTGGGACGCTTGTACTACTTTGATCCAAGCACTGGCAAACCAGGGAAGCTCCCAAATAATGTCAACAACTTGGTCACCGGTGTGGCACTCGTCGGAACGTTATCCGGCCAGCTATTCTTCGGCTACCTCGGAGACAAGCTGGGGCGAAAGAAAGTGTACGGTGTCACGCTTATCCTCATGGTGGCGTGTGCCATTTGCTCCGGGCTCTCCTTTGGCGCCTCAGCCAAGTCTGTGATGGGAACGCTATGCTTCTTCAGGTTCTGGCTGGGCTTTGGCATTGGAGGCGACTACCCACTATCTGCCACCATCATGTCCGAATACGCTAACAAGAGAACACGAGGTGCTTTCATCGCTGCAGTTTTTGCCATGCAAGGCGTGGGAATCATCTTCGCCGGGCTGGTGTCAATGTGTCTATCAGCAGGTTTCAAGGCATCCTACCATGCTCCCTCCTTCCATGACGACCCCATAATGTCAACGCAACCCCAAGGCGACCTCATGTGGCGTCTGGTCCTTATGATCGGAGCCGTCCCGGCTGCGATGACATACTACTGGCGAATGAAGATGCCTGAGACTGGCCGCTACACCGCCATCATCGAAGGCAACGCGAAGCAAGCGGCTGCAGACATGGCAAGGGTTCTCGACATCGAAATCCAAGCGGAGCAAGACAAGTTAGCCGAGTTCAAAGCCGCAAATGATTACCCTTTGTGGTCAAACGAGTTCTTCACACGGCATGGGCGTCACTTGATCGGTACAATGACCTCATGGTTCTTGCTAGACATCGCTTTCTACAGCCAGAACCTCACACAGAAAGACATCTTCCCCGCGATGGGACTCATCGATAAGGATTTCGAGATGAACGCAATCCAAGAAGTGTTCGAGACCTCACGAGCCATGTTCGTGATTGCATTGTTCGGAACCTTCCCAGGGTACTGGTTCACCGTGTTCTTCATTGAGAAGTTGGGACGATACAAGATCCAACTCATTGGTTTCTTCATGATGTCGGTCTTCATGTTCATCATTGGTGTAAAGTATGACTACCTAAGGAACGAGAACAGCCACATGTTCGCTCTTCTCTACGGTTTGACGTTCTTCTTTGCGAACTTCGGACCTAACAGCACAACATTCGTGCTGCCGGCCGAGCTGTTCCCTACTCGAGTGAGGTCGACGTGCCACGCGCTGAGTGCAGCAGCGGGGAAGGCTGGGGCAATGGTCGGAGCGTTCGGGATTCAGAACTACACGCAGAAAGGGGAGCAGAAGCAGATTAAGCACGCCATGATGATCCTGGCGGTGACCAACTTGATTGGGTTCTTCTGCTCCTTCTTGGTGACAGAAACCAAGGGACGATCGTTGGAAGAGATCTCCGGGGAGGATGGGAGAGAGAGTGAGCTCACGCCGACACCACCGAATAATAGGGTTCCCACTCGTCAGGAACCAAGGTCCGAGACGATGTAA 1587 0.5268 MALEVLEALDSARTQWYHVTAIVIAGMGFFTDAYDLFCITTVSKLLGRLYYFDPSTGKPGKLPNNVNNLVTGVALVGTLSGQLFFGYLGDKLGRKKVYGVTLILMVACAICSGLSFGASAKSVMGTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGVGIIFAGLVSMCLSAGFKASYHAPSFHDDPIMSTQPQGDLMWRLVLMIGAVPAAMTYYWRMKMPETGRYTAIIEGNAKQAAADMARVLDIEIQAEQDKLAEFKAANDYPLWSNEFFTRHGRHLIGTMTSWFLLDIAFYSQNLTQKDIFPAMGLIDKDFEMNAIQEVFETSRAMFVIALFGTFPGYWFTVFFIEKLGRYKIQLIGFFMMSVFMFIIGVKYDYLRNENSHMFALLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAAAGKAGAMVGAFGIQNYTQKGEQKQIKHAMMILAVTNLIGFFCSFLVTETKGRSLEEISGEDGRESELTPTPPNNRVPTRQEPRSETM* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5740 528 SUPERFAMILY MFS general substrate transporter 8 499 IPR036259 -
Lja1g5740 528 Gene3D MFS general substrate transporter like domains 17 513 IPR036259 -
Lja1g5740 528 Pfam Sugar (and other) transporter 22 499 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja1g5740 528 MobiDBLite consensus disorder prediction 496 528 - -
Lja1g5740 528 CDD MFS_PhT 22 491 - -
Lja1g5740 528 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 492 IPR020846 GO:0022857
Lja1g5740 528 TIGRFAM 2A0109: phosphate:H+ symporter 6 501 IPR004738 GO:0005315|GO:0006817|GO:0016021
Lja1g5740 528 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 2 509 - -
Lja1g5740 528 MobiDBLite consensus disorder prediction 508 522 - -
Lja1g5740 528 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 2 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5740 Lja-Chr1 101872455 101874751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5740 3 501 Inorganic Solute Cotransporters AT5G43350 61.644 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5740 K08176 - gmx:100802261 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5740 1 101872455 101874751 Lja1g5740 1 101872455 101874751 ECH