Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5731 ATGGCTGCACAAGCTCTTGTTTCTTCATCATCTCTTGCATTCTCAGCTGAGGCTGCCAAACAGAGCCTTGGAGCAAGATCACTCCAATCTCCTATTGGATCCTCCAGAAAAGGCTCCTTCATTGTCAAGGCAGCTTCTACTCCTCCTGTCAAGCAAGGAGCAAATAGACCCTTGTGGTTTGCATCAAAGCAGAGTCTTTCTTACTTGGATGGCAGCCTTCCAGGTGACTTTGGATTTGACCCACTAGGACTCTCAGACCCTGAAGGAACAGGAGGGTTCATCGAGCCAAAATGGCTAGCATACGGTGAGATAATCAACGGTCGCTTCGCAATGTTGGGTGCAGCCGGTGCCATCGCGCCTGAAATTCTCGGCAAGGCCGGTCTGATTCCAGAGGAAACAGCACTCCCATGGTTCCAAACCGGTGTGATTCCACCTGCAGGAACATACAGCTACTGGGCAGACTCATACACGCTGTTTGTGTTGGAGATGGCGCTCATGGGCTTTGCGGAGCACAGGAGGTTCCAAGACTGGGCCAAGCCCGGGTCCATGGGCAAGCAGTACTTCTTGGGCCTGGAGAAAGGCCTCGGAGGCTCCGGTGACCCGGCGTACCCTGGCGGGCCTTTCTTCAACCCTCTTGGGTTCGGTAAGGATGAGAAATCCATGAAGGAGTTGAAGCTCAAGGAAGTTAAGAATGGAAGGTTGGCCATGTTAGCAATCTTGGGTTACTTTATTCAAGGCCTTGTCACTGGTGTTGGGCCTTACCAAAACCTCCTAGATCATCTTGCTGACCCTGTCAACAACAATGTCTTGACCAGTCTCAAGTTCCACTGA 831 0.5174 MAAQALVSSSSLAFSAEAAKQSLGARSLQSPIGSSRKGSFIVKAASTPPVKQGANRPLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPWFQTGVIPPAGTYSYWADSYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5731 276 Gene3D Chlorophyll a/b binding protein domain 58 275 - -
Lja1g5731 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 275 IPR001344 GO:0009765|GO:0016020
Lja1g5731 276 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 275 - -
Lja1g5731 276 Pfam Chlorophyll A-B binding protein 67 245 IPR022796 -
Lja1g5731 276 SUPERFAMILY Chlorophyll a-b binding protein 55 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5731 Lja-Chr1 101765271 101767938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5731 1 276 Chloroplast and Mitochondria Gene Families AT1G61520 87.319 4.26e-171 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5731 K08909 - gmx:100784090 503.827