Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5728 ATGTGTACTACTCAGCAAGAGAAGTTTGTTAGGTTTCAGGTTTGTAATCCAGAGAAAGTTTGTGATAGCAATTATCCTGCAATTAAAATAATGCAATCAGGGAGGTTTGGAACTAAATTAAGTTCGTTTTCTGAGAAGTTTCAGAAGGGATTGGAATTTGGTTCTGAGAGGATAAATAGACTCAGGACAACATTTGAATACTTTGGTTCTAAAAGGAAAATCCTTGATCCACAGGGTTCATTCCTTCAAAAGTGGAACAAGATATTTGTGTTATTATGTGCTATTTCAGTATCACTGGACCCTTTGTTCTTTTATGTCCCTATGATTGATGATGAGAAGAAATGTCTTTCCCTTGACAACGGAATGGAAATTACAGCTACTGTTCTAAGATCTTTCTTTGATGTCTTATATATAATTCGCATGTTTTTCCAATTCCGCACTGGATTCATAGCTCCCTCTTCTCAAGTATTTGGAAGAGGTGTTCTGGTTGAAGATTCTTGGGCAATAGCTAGGAGGTATTTGTCATCATATTTCTTAGTTGATATTCTAGCTGTTCTTTCCCTCCCACAGGTGGTAATTCTAATTATCATTCCAAAGATGAGCGGGTTTAAATCTCTCAATACAAAGAACTTGCTGAAAGTTGTTGTTGTTTTCCAATATGTGTCTCGTTTATTACGAATACTTCCATTGTATAAAGAAGTCACGAGGACCTCTGGAATTCTCACTGAAACAGCTTGGGGTGGAGCCGCATTAAATCTCTTTCTTTACATGCTTGCAAGTCATGTAAAAGCCTGTCGAAGTAATACAATGTGTAACAAGGCAGATATGTATTGTAATGACCATTGGGGAGAGTTGAGCAAAATTTCAACATACCTGAATGCTTCTTGTCCAATAAAGGAAGAAGATAAAAAACTCTTTAATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCACGAGATTTTCCTCAAAAATTCTTTTACTGTTTTTGGTGGGGCCTAAAAAGCTTGAGTTCTCTCGGTCAGAACCTGGAAACAAGTACCGATGTTTGGGAAATCTGTTTTGCAGTTTTCATTTCCATAGCTGGTTTGGTATTATTTTCGTTCCTCATTCGAAATATGCAGATATATTTGCAGTCAACAACGACAAGATTGGAGGAGATGAGAATAAAAAGGAGGGATCGAATCAGACGACATGAACAATACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGATCTGTAATCTTCCAAAGGATTTAAGAAGGGACATCAAGCGTCATCTTTGCTTGGCTTTAATGATGAGAGTGCCAATGTTCGAGAAAATGGATGAACAACTTTTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTATACACAAAAGAAAGCTGCATTGTTCGAGAAGGTGACCCGGTCGATGAGATGCTCTTCATAATGCCAAGTAAGCTATTGACCATGACAACTAATGGTGAAAGAACCGGTTTCTTCAACTCTGAGTACCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTCCTGACATGGGCTCCAGATCCTCATTCCTCATCCAACCTCCCCATCTCAACCAGGACTGCCCAAACCCTTAAAGAAGTGGAAGCCTTCGCGCTAAAATCCGATGATCTAAAGTTCGTGGCATCTCAGTCCCGGCGCCTTCACAACAAGAAGCTGCGCCACACATTCAGATTCTACTCGCAACAATGGCGCATGTGGGCAGCGTCCTGGAGGCGCTACAGCAAGAGGAAGCTTGAAGAGTCACTTGTTGAAGAGGAGAATAGGCTGAAAGATGCATTGGCAAAGGCAATTGGTAGCTCACCAAGTCTAGGCGCCACCATATATGCTTCCAGGTTTGCTGCCAATGCACTCAGATTATTGCGTCGTAGCGGCACCAGGAAGACAAGGGTGTCGGAGAGGATACCCCCCATGCTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGATGAGGAGCAATAG 2007 0.4145 MCTTQQEKFVRFQVCNPEKVCDSNYPAIKIMQSGRFGTKLSSFSEKFQKGLEFGSERINRLRTTFEYFGSKRKILDPQGSFLQKWNKIFVLLCAISVSLDPLFFYVPMIDDEKKCLSLDNGMEITATVLRSFFDVLYIIRMFFQFRTGFIAPSSQVFGRGVLVEDSWAIARRYLSSYFLVDILAVLSLPQVVILIIIPKMSGFKSLNTKNLLKVVVVFQYVSRLLRILPLYKEVTRTSGILTETAWGGAALNLFLYMLASHVKACRSNTMCNKADMYCNDHWGELSKISTYLNASCPIKEEDKKLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLKSLSSLGQNLETSTDVWEICFAVFISIAGLVLFSFLIRNMQIYLQSTTTRLEEMRIKRRDRIRRHEQYKWQETRGVDEDNLICNLPKDLRRDIKRHLCLALMMRVPMFEKMDEQLLDAMCDRLKPVLYTKESCIVREGDPVDEMLFIMPSKLLTMTTNGERTGFFNSEYLKAGDFCGEELLTWAPDPHSSSNLPISTRTAQTLKEVEAFALKSDDLKFVASQSRRLHNKKLRHTFRFYSQQWRMWAASWRRYSKRKLEESLVEEENRLKDALAKAIGSSPSLGATIYASRFAANALRLLRRSGTRKTRVSERIPPMLLQKPAEPDFTDEEQ* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5728 668 SUPERFAMILY cAMP-binding domain-like 387 566 IPR018490 -
Lja1g5728 668 SMART cnmp_10 444 575 IPR000595 -
Lja1g5728 668 ProSiteProfiles cAMP/cGMP binding motif profile. 444 528 IPR000595 -
Lja1g5728 668 CDD CAP_ED 444 575 IPR000595 -
Lja1g5728 668 Gene3D Helix hairpin bin 387 435 - -
Lja1g5728 668 Gene3D - 87 383 - -
Lja1g5728 668 Gene3D Jelly Rolls 442 562 IPR014710 -
Lja1g5728 668 Coils Coil 591 611 - -
Lja1g5728 668 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 666 - -
Lja1g5728 668 SUPERFAMILY Voltage-gated potassium channels 76 382 - -
Lja1g5728 668 Pfam Ion transport protein 85 387 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g5728 668 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5728 Lja-Chr1 101712970 101723130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5728 5 667 Ion Channels AT5G53130 68.855 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5728 K05391 - gmx:100801032 1051.97