Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5725 ATGAAGAACCCAAAACGACACCCGTCGGAATCCTCTCTCCGGCGAGTGACCTCTGAGGAGACCGTGACGGGGTTGAAGAATGCTCACCGGAGGAGGCTGAAAATTCGGCGAATGAAGTACAGCTGCCAGGCGAAGATCAACGCCGGCGACGGAGATTTTCCTCCGTCGGGGAAGGAGCGGAGGGAGATTCATGAGTCTGTGCAGATATCACTGTCCCTGGCGAACTCTTCGTCGTCATCATCATCGGAGGAGGATCGGGAGCGGAAGCGAGACGACGGCGTTTTGCCGTACGGTTCGGTTTCGGTGGTGGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGCGTGGAGACAGGGTGCGTGACGAAGTGCGACTACTTCGCTGTTTTTGACGGTCACGGCGGAGCTCAGGTGGCGGAGGCGTGCCGGGAGCGGCTGTATCGGCTTGTGGCGGAGGAGGTTGAGAGGTGCGGGAATGGGGTGGAGGAGGTGGACTGGGAGGAAGTGATGGAAGGGTGTTTTCGTAATATGGACGGTGAGGTGGCGGGTAATGCGGCGTTGAGGACGGTGGGTTCCACGGCGGTTGTCGCCGTTGTTGCAGCGGCGGAGGTTGTCATCGCTAATTGCGGTGATTGTAGAGCGGTGTTAGGCAGAGGAGGTGAAGCTGTGGATTTGTCTAGTGATCATAAGCCCGACAGGCCTGATGAGTTGATGCGAATCGAGGAAGCTGGTGGAAAGGTCATAAACTGGAATGGCCAGCGTGTTCTAGGTGTTCTTGCCACTTCCCGATCTATAGGGGATCAGTACCTTCGACCCTATGTAATATCGAAACCGGAAGTGACAGTGACAAAGAGAAGCAGCAAGGATGAGTTTCTGATACTAGCAAGTGATGGCTTGTGGGATGTGATCTCAAGTGAAATGGCGTGCCAGGTTGTGAGAAAATGCCTCAACGGGCAGATTAGGAGAATTTGTAATGAGAATCAAAGTCGTGCTTCTGAGGCTGCAACTCTTTTGGCTGAGATAGCATTGGCAAAGGGAAGCAGGGATAACACCAGTGTCATTGTAATTGAGCTGAGAGGGACTGTAACATAG 1089 0.5455 MKNPKRHPSESSLRRVTSEETVTGLKNAHRRRLKIRRMKYSCQAKINAGDGDFPPSGKERREIHESVQISLSLANSSSSSSSEEDRERKRDDGVLPYGSVSVVGSRKEMEDAVSVETGCVTKCDYFAVFDGHGGAQVAEACRERLYRLVAEEVERCGNGVEEVDWEEVMEGCFRNMDGEVAGNAALRTVGSTAVVAVVAAAEVVIANCGDCRAVLGRGGEAVDLSSDHKPDRPDELMRIEEAGGKVINWNGQRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRSSKDEFLILASDGLWDVISSEMACQVVRKCLNGQIRRICNENQSRASEAATLLAEIALAKGSRDNTSVIVIELRGTVT* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5725 362 Gene3D - 84 360 IPR036457 -
Lja1g5725 362 ProSiteProfiles PPM-type phosphatase domain profile. 96 357 IPR001932 -
Lja1g5725 362 PANTHER ALPHABET, ISOFORM E-RELATED 39 361 - -
Lja1g5725 362 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g5725 362 PANTHER PROTEIN PHOSPHATASE 2C 51-RELATED 39 361 - -
Lja1g5725 362 SUPERFAMILY PP2C-like 95 358 IPR036457 -
Lja1g5725 362 SMART PP2C_4 86 355 IPR001932 -
Lja1g5725 362 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Lja1g5725 362 SMART PP2C_SIG_2 110 357 IPR001932 -
Lja1g5725 362 MobiDBLite consensus disorder prediction 70 97 - -
Lja1g5725 362 ProSitePatterns PPM-type phosphatase domain signature. 125 133 IPR000222 GO:0043169
Lja1g5725 362 CDD PP2Cc 97 357 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5725 Lja-Chr1 101692832 101695633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5725 66 358 PP2C-type Phosphatase Gene Family AT2G29380 49.216 1.63e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5725 K14497 - gmx:100807235 498.819