Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5724 ATGTCTTGGAGAAGGTTTCTCCTTAATGTAACCCTTCTTGTGGTCCTTGTATACCCACTTCCTTGCCTAACAGAGAGAAATCACCAATGTCCCCTTTCATCTTGTGGCAATATACAAAATATCAGTTACCCTTTTCGGCTACAAGCTGATCCTCAAAACTGTGGAGACCCCAGATATGAACTTGTATGTGAGAACAATCAAACAGTGCTAAATTTATACAATGGAAAATATTCTGTTCAGACCATCAACTACAATAATTCCACAATAAGGGTCACAGATTTGGGTATCAGAAAAGACAATTGCTCTTCCATTCCTCTCTACACTTTAACGCATGACAACTTCAGCTCTGGACAACCTTTTAGCTTGTTGGGTGGCAGTAACTTGGATGTCATAGCATTTATGAGCTGTGAAGTCCCAATTATATCCCCTCTCTACATTGATATTGCAGCTTGTACCAAAAGCTCCAGCTCCTCTATTTCTTCTTTCACTCCAAATAAGTACAACTTTGCTGTACATGGGGATTTGAAGATCTCTGAGTTGGAGGCGTCATGCAGCGTACTTGTTATGGTTATGACTTCAAATTTCAGCAGAGATGACCTGAACCTTTCATATTCAAATCTCCACCAGAACCTGGTTGATGGGCTACAGCTTTCTTGGGGAAATATAACCTGCCATGAGTGCGAAGAACGGGGCTATGGTCTTCACAAATTTGGCGTTATCATTGGAGTTATCGTTCTCATAAGAATCACAGGTGGAGTACTATTTATCTTTATGTACACGGTATATAAGTGGCAAAGGAGGCATTTATCTGCGTACGACTCAGTTGAAGAGTTCCTCAAAACTCACAACAATCTCATGCCAATTAGGTACTCCTACTCCGAGATTAAAAAGATCACTAAAGGGTTCAAGGATAAACTTGGTGAGGGAGGCTATGGCTCTGTTTACAAAGGAACACTTCGCAACGGACATCTCGTAGCAATCAAGATGCTAGGTGGAAAGTCCAGAGCAAATGGTCAAGAATTCATCAATGAAGTTGCCACTATTGGAACAATTCACCATGTGAACGTGGTGCACCTCATTGGCTTCTGCGTTGAGAAATCAAAAAGAGCTCTTGTCTATGAATTCATGCCCAATGGTTCCCTTGACAAGCACATTTTTTCACGAGAAGCAACAATCGCCTTGAGCTGGGAGAAAATGTTTGACATCGCTCTTGGTGTGGCTCGCGGTATTGAATATCTACATCGAGGGTGTGACATGAGGATCTTGCACTTCGACATTAAGCCTCATAATATTCTTCTTGATGAGAACTTCACTCCAAAAGTTTCGGATTTTGGGCTGGCAAAGCTCTACCCAACTGATAACAGCATTGTGACCCTCACAGCTGCAAGAGGAACCATGGGGTACATGGCACCTGAGTTGTTCTACAAGAACATTGGAGGCGTTTCATACAAGGCAGATGTTTATAGCTTTGGAATGTTGTTGATGGAAATGGCGAGCAGGAGAAAGAACATGAACGAGCGCGTGGATCGTCCAAGCCAGGTTTATTTTCCTTCTTGGGTTTACCAGCAATTCAGTGAAGGGAAGGAAATAGAAATGGGGATAAATGCTGTAGAGGAGGACAGGACAATTCTGAAGAAGATGATATTAGTTGCTTTGTGGTGCATACAGATGAAGCCTAGTGATCGACCTTCAATGAACAGAGTGGTTGAGTTGCTTGAAGGAGATGTTGAGTTGCTTGAAATGCCTCCCAAGCCATTTCAAACTCCAAAGGGAATGTCAGTACAAGGAGGCATTGGAAATTTCAGAAATCTACCTTGGTTGCCACCACCTGGGGACTCTTCAAACTCACTAACCATAGTTATAAATCAACGTTAA 1875 0.4229 MSWRRFLLNVTLLVVLVYPLPCLTERNHQCPLSSCGNIQNISYPFRLQADPQNCGDPRYELVCENNQTVLNLYNGKYSVQTINYNNSTIRVTDLGIRKDNCSSIPLYTLTHDNFSSGQPFSLLGGSNLDVIAFMSCEVPIISPLYIDIAACTKSSSSSISSFTPNKYNFAVHGDLKISELEASCSVLVMVMTSNFSRDDLNLSYSNLHQNLVDGLQLSWGNITCHECEERGYGLHKFGVIIGVIVLIRITGGVLFIFMYTVYKWQRRHLSAYDSVEEFLKTHNNLMPIRYSYSEIKKITKGFKDKLGEGGYGSVYKGTLRNGHLVAIKMLGGKSRANGQEFINEVATIGTIHHVNVVHLIGFCVEKSKRALVYEFMPNGSLDKHIFSREATIALSWEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDENFTPKVSDFGLAKLYPTDNSIVTLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNMNERVDRPSQVYFPSWVYQQFSEGKEIEMGINAVEEDRTILKKMILVALWCIQMKPSDRPSMNRVVELLEGDVELLEMPPKPFQTPKGMSVQGGIGNFRNLPWLPPPGDSSNSLTIVINQR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5724 624 Gene3D Phosphorylase Kinase; domain 1 274 375 - -
Lja1g5724 624 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 7 227 - -
Lja1g5724 624 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 240 598 - -
Lja1g5724 624 ProSiteProfiles Protein kinase domain profile. 300 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5724 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Lja1g5724 624 Pfam Protein kinase domain 303 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5724 624 SMART serkin_6 300 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5724 624 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Lja1g5724 624 SUPERFAMILY Protein kinase-like (PK-like) 281 572 IPR011009 -
Lja1g5724 624 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Lja1g5724 624 CDD STKc_IRAK 306 574 - -
Lja1g5724 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 227 IPR045874 GO:0004672
Lja1g5724 624 PANTHER RUST RESISTANCE KINASE LR10-RELATED 240 598 IPR045874 GO:0004672
Lja1g5724 624 Gene3D Transferase(Phosphotransferase) domain 1 376 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5724 Lja-Chr1 101654420 101657538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5724 10 585 Receptor kinase-like Gene Family AT5G38260 36.688 2.95e-110 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g5724 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5724 - - csin:114257187 686.411