Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5723 ATGTTGGGTAATTGTTCTGGAGCAGTTCTGGCATTCTTTTGCTTCCTTTTGGCATTAAGCTTCTGCACTAAGCTTGCTTCAGCTGATATTGGATGCGAAAAAACAAGGTGCAGTTCTCATGCCCCCACTATTCAGTACCCTTTCCGATTGCAAAGCACACAACCACAAAAGTGCGGTGAAACTGGTTTTGATCTTTCATGCAGTGAGAACCACAAAACCATGCTAGAATTGCCACTTTCAGTAAAACTTGCTGTCAACAAAATCGATTACAAGTCCCACACAGTTCATGTCACTGTCCCAGATGGGTTGTGCCTTCCAAAACTCCTCTCCCATCTCAACATGTCTGCAACTCCTTTTCACTTCCTTGAAAATCCCTTTTACCATGCAAACTACACCTTATTTAATTGTTCATCCATGAACACAGCTTTGAATTCTTATTCTTCAATTTCGTGCCTTTCTGGTTCCGGATACAAAGTTTATGCCTTGAACTCCTCACTTCGAATCAAGGATGTTACTTTGTCATACTGCACTAAGTTGTACGACCTACCATCAGTTCCAAGTTATGTTTTTCACCAGCAGAATGATCTTATTTTAAGCTGGGATGAAAGCTGTGATAATCAAACAAATCATGAATGTTACAAGATTCTCCACAAATCCAAAGGTCCATGGAAAAAAGTGGAGATTCTAGCACCAATCCTATTATTTATTCTAATCTTGCTACTGGTGATTGTGCTATATCGTGTCCGCTACACAAGCCAAAAAGACAAAGAAAACCAAGCAAGAATAGAGAACTTCTTGGAAAACTACAGAGCACTCAAACCCACGAGATACTCCTATGCAGACATCAAGAGGATCACAAGCAATTTCAAGAACGAGCTGGGGCAGGGAGCGTATGGAATGGTGTACAAAGGCAAATTATCCGGCGAGATTTTCGTGGCGGTTAAGCTTCTTGCGAGCTCCACCACCGGTAACGGACCGGAGTTCATCAATGAGGTTGTGACAATGGGGCAAATCCACCATGTCAACGTGGTTCGCTTGGTTGGTTTCTGCGCAGATGGACACACACGAGCTCTAGTTTACGAGTACTTACCAAATGGTTCTTTGCAGAAGTTCATATCCACCACAGATTTCAAAAACCATTTCCTGAGCTGGGAGAAGCTGCAAGAAATTGCAGTGGGGATAGCTAAAGGGATTGAGTATCTTCACCAAGGGTGTGACCAGAGGATCCTGCATTTTGATATCAAGCCTCATAATGTGTTACTTGACCACCATTTTATTCCCAAGATATCTGATTTCGGAATGGCTAAGCTTTGTTCCAAGGACCAAAGCGCAGTTTCCATGACCGCGGCGAGAGGAACTGTAGGCTACATAGCACCAGAAGTGTTCTCTAGGAACTTTGGGAATGTGTCATACAAGTCTGATGTGTATAGTTTTGGGATGTTGTTGCTTGAGATGGTGGGAGGAAGACAGAATGTTAATGTTAATGTTAATGTTGATGTTGATGATGGTGCTAAGAGAACTGGTGTGGGCTATTTTCCTGAATGGATTTACAATCAGTTAGAGCAAGGTGGTGACTTGAGAGAACACATTGAGGTGGAGAAGTATGCTAACATAGCTAAGAAGCTTGCAATTGTGGGACTCTCCTGCATTCAATGGCACCCGGTTGATCGTCCTTCTATGCAAGTTGTGGTTCACATGTTGGATGGAGATGGAGGAAACTTAAGTTTGCCATCCAATCCTTTTGCTTCTGCTGATCCAGTTATAATGAATGTTAATATGCTTGGAAGGCAGCTTCACAGGGAGTAG 1806 0.4275 MLGNCSGAVLAFFCFLLALSFCTKLASADIGCEKTRCSSHAPTIQYPFRLQSTQPQKCGETGFDLSCSENHKTMLELPLSVKLAVNKIDYKSHTVHVTVPDGLCLPKLLSHLNMSATPFHFLENPFYHANYTLFNCSSMNTALNSYSSISCLSGSGYKVYALNSSLRIKDVTLSYCTKLYDLPSVPSYVFHQQNDLILSWDESCDNQTNHECYKILHKSKGPWKKVEILAPILLFILILLLVIVLYRVRYTSQKDKENQARIENFLENYRALKPTRYSYADIKRITSNFKNELGQGAYGMVYKGKLSGEIFVAVKLLASSTTGNGPEFINEVVTMGQIHHVNVVRLVGFCADGHTRALVYEYLPNGSLQKFISTTDFKNHFLSWEKLQEIAVGIAKGIEYLHQGCDQRILHFDIKPHNVLLDHHFIPKISDFGMAKLCSKDQSAVSMTAARGTVGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNVNVNVNVDVDDGAKRTGVGYFPEWIYNQLEQGGDLREHIEVEKYANIAKKLAIVGLSCIQWHPVDRPSMQVVVHMLDGDGGNLSLPSNPFASADPVIMNVNMLGRQLHRE* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5723 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Lja1g5723 601 Pfam Wall-associated receptor kinase galacturonan-binding 32 97 IPR025287 GO:0030247
Lja1g5723 601 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 599 IPR045874 GO:0004672
Lja1g5723 601 Pfam Protein tyrosine and serine/threonine kinase 289 567 IPR001245 GO:0004672|GO:0006468
Lja1g5723 601 SUPERFAMILY Protein kinase-like (PK-like) 268 567 IPR011009 -
Lja1g5723 601 Gene3D Transferase(Phosphotransferase) domain 1 363 572 - -
Lja1g5723 601 SMART serkin_6 287 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5723 601 Gene3D Phosphorylase Kinase; domain 1 259 362 - -
Lja1g5723 601 ProSiteProfiles Protein kinase domain profile. 287 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5723 601 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Lja1g5723 601 PANTHER RECEPTOR-LIKE KINASE 24 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5723 Lja-Chr1 101650210 101652706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5723 229 581 Receptor kinase-like Gene Family AT4G18250 47.139 2.07e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g5723 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5723 - - zju:107414589 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5723 1 101650210 101652706 Lja1g5723 1 101650210 101652706 ECH