Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5722 ATGACACAAAAGACAAGCATAAGAAGAAGAAGAAGGTCCCTTTTTCAATCTTGTACAAGCATGAAAAGGGAAGCCTCATCCTCATCCTCATCCTCATCCTCATCCTCATGCTCCTCCCGCGCAGTTCTCTCAATACTCGCCACCATCATTCTCCTATTCCAACCAACTTGTCTCGCTAAGCACCACCAACCACCATGTCCACCATCTTCCTGCGGCAAAATCCACAACATATCTCACCCATTTCGTCTCACAACCGACCCACCCCACTGCGGAGACCAAAGGTACCAACTAGATTGCGAAAACAACAACACAACACTGTCGTTAACATTCTCCTTCGGAAAATTCTTAGTCCACAACATCGATTACAATAGATTCAAACTTCGATTAACTGATGCCAGCGCGGCGGAGAACAACGACTCCACCGCCTCCACCGCCGCCGCTAATTGCTCCTCCTACAACATCCCTCGCTATTTCCTATACGATCGCAGCTTCATCGAACGCAGTATCACCGAGCTCGTTGGCCCTGATGATTTCGGATCTGACCCGTTTATTCTAGACTCATCCTTCGATCGCATAGCGTATTTCAACTGTTCCGATCCAATCCAAGATTCCAGATACGTGAGTGTTGACCGCTGTGGGACTGGAAGAGGGTATGTGTATGCGGTTATGGAACCGTCGTTGTATGAGTACCGTGTGAGAGATATCAAGGTTGGGTGTACTCTTGTGGCGGCTACGTTGGGTAGTAGGAGCATTCAGGGGATTGGAAATGGGAATGGGAATGTTTCTTATGGTGAGATCCATGGGGTGATAATGGAAGGGTTTGAGGTGTCGTGGTTGCCTGTGGTTTGTGAAGATCGGTGTGGAAAAGGGACTAAATGTGAGGTTGTTGATGAATCAAGTGGAGAAGTTCAATGTGATAGGCACTATTGTCATTACGCATACAAGACAACCGATAAGTGTGGCCTTCCGCTAAAGATCCTTGGTTATACTCGAGCTTATCTTAGAGGCATTGTCATTGGTTTTCGCAGCAGAATAACATTCAGCACAAAACAATTGGACAACCCCGTTGGACTGGAATACTTCGATGGAGGAATATACATAGGACGAACTGTTCTGCCATCGCTCTTGGCAGCTAGATATGCGCTTGGAGTTACAATTGTGCTGGTGCTATTCATCTATAGATGGCGCCGAAGACATTTATCAGTGTATGAAAACATTGAAAACTTTCTGCTAGACACCAATTTAAATCCCCTCAGGTACGAGTACAAAGAAATCAAGAAGATGACAGGAGGTTTCAGAGTAAAACTGGGCCAAGGAGGCTTTGGCTCAGTCTACAAAGGAAAGCTCAGAAGTGGCCCCGATGTCGCGGTGAAGATGCTGAGCAAATCTGATGGCGACGGACAAGACTTTATCAATGAAGTTGCAACAATTGGAAGAATACATCATGTGAACGTGGTGCGTCTAGTTGGTTATTGTGTTGAAGGGAAAAAGCGTGCTCTGATTTATGAATTCATGCCTAATGGGTCATTGGACAAATACATTTTCTCTAAAGAAGGAAGTGACCCTTTAAGTTATGATAAAATATACGAAATCTCCCTTGGAATCGCGCGTGGGATAGCGTATCTACATCAAGGTTGTGATATGCAAATTCTTCATTTTGACATCAAGCCTCATAATATCCTTCTAGATGACAACTTCATTCCGAAGGTTTCGGATTTTGGACTTGCAAAGCTATACTCTGCCAATGATAGCATTGTCCCTTTAACTGCAGCAAGGGGAACCTTGGGTTACATGGCTCCGGAGTTGTTCTATAAAAATATTGGAGGAGTATCTTATAAAGCAGATGTTTATAGCTTTGGCATGCTTTTGATGGAAATGGCAAGTAGGAGGAAAAATTCAAATCCACATGCAGAGCATTCTAGCCAAGTTTACTTCCCCTTTTGGGTCTATGATCAGTTTAAAGAAGTGAAAGATATTGAATTAGAGGATGCCTCTGAAGAGGAAATGATTCTAGCAAAAAGAATGTTCATGGTTTCACTTTGGTGTATTCAGTTCAAACCAAGTGATCGTCCTTCAATGAACAAGGTAGTCGAGATGCTTGAAGGGAAGGCCGAAACTCTTGAAATGCCTCCAAGACCTACGTTTTATCAAAATCAAACAGTGAATCCTGATGATGGGAATGGAATCAACTCGGACCAAACCTCATGGAGTGATTCAACTTCGTCTGATAGTTACAATCTTGGCGAATCATTCAATGGAGAGTAA 2265 0.4384 MTQKTSIRRRRRSLFQSCTSMKREASSSSSSSSSSSCSSRAVLSILATIILLFQPTCLAKHHQPPCPPSSCGKIHNISHPFRLTTDPPHCGDQRYQLDCENNNTTLSLTFSFGKFLVHNIDYNRFKLRLTDASAAENNDSTASTAAANCSSYNIPRYFLYDRSFIERSITELVGPDDFGSDPFILDSSFDRIAYFNCSDPIQDSRYVSVDRCGTGRGYVYAVMEPSLYEYRVRDIKVGCTLVAATLGSRSIQGIGNGNGNVSYGEIHGVIMEGFEVSWLPVVCEDRCGKGTKCEVVDESSGEVQCDRHYCHYAYKTTDKCGLPLKILGYTRAYLRGIVIGFRSRITFSTKQLDNPVGLEYFDGGIYIGRTVLPSLLAARYALGVTIVLVLFIYRWRRRHLSVYENIENFLLDTNLNPLRYEYKEIKKMTGGFRVKLGQGGFGSVYKGKLRSGPDVAVKMLSKSDGDGQDFINEVATIGRIHHVNVVRLVGYCVEGKKRALIYEFMPNGSLDKYIFSKEGSDPLSYDKIYEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYSANDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNSNPHAEHSSQVYFPFWVYDQFKEVKDIELEDASEEEMILAKRMFMVSLWCIQFKPSDRPSMNKVVEMLEGKAETLEMPPRPTFYQNQTVNPDDGNGINSDQTSWSDSTSSDSYNLGESFNGE* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5722 754 MobiDBLite consensus disorder prediction 708 754 - -
Lja1g5722 754 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 726 IPR045874 GO:0004672
Lja1g5722 754 CDD STKc_IRAK 436 702 - -
Lja1g5722 754 SMART serkin_6 430 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5722 754 Pfam Protein tyrosine and serine/threonine kinase 434 700 IPR001245 GO:0004672|GO:0006468
Lja1g5722 754 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 35 726 - -
Lja1g5722 754 Pfam Wall-associated receptor kinase galacturonan-binding 66 131 IPR025287 GO:0030247
Lja1g5722 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Lja1g5722 754 ProSiteProfiles Protein kinase domain profile. 430 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5722 754 Gene3D Transferase(Phosphotransferase) domain 1 505 712 - -
Lja1g5722 754 SUPERFAMILY Protein kinase-like (PK-like) 415 701 IPR011009 -
Lja1g5722 754 ProSitePatterns Protein kinases ATP-binding region signature. 436 458 IPR017441 GO:0005524
Lja1g5722 754 Gene3D Phosphorylase Kinase; domain 1 408 504 - -
Lja1g5722 754 MobiDBLite consensus disorder prediction 712 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5722 Lja-Chr1 101645978 101649515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5722 419 735 Receptor kinase-like Gene Family AT5G38280 51.242 2.70e-106 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g5722 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5722 - - lja:Lj0g3v0275229.4 1483