Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5721 ATGGCCAAAGGTTTCAAAGAAAAGTTGGGTGAAGGAGGATTTGGCACTGTGTTCAAGGGGAACCTTTGTAGCGGGCCATCTGTGGCCCTAAAGATGTTGGCAAAATCTAAAGGCAAGGGGAAAGACTTCATCAATGAAGTAGCAACCATTGGAAGGGTACATCATTTAAATGTGGTACAACTAATTGGATTTTGTATTGAAGGGCCGAAGCACGCTCTGGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATTTTCTCTAAAGAAGGAAGTATACATTTAAGCCTTGAAAAAATATATAGTATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAGATGAAGATTTTGCATTTTGATATCAAACCCCACAACATCCTACTAGATGAGAACTTCACCCCAAAGATCTCTGACTTTGGATTGGCCAAGCTATATCCGGTTGATAATAGCATTGTCACAATGACCGCAGCAAGAGGAACAATTGGGTACATGGCTCCGAAGTTATTCTACAAAAATATTGGTGGTGTGTCTTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAGATGGCAAGCAATAGGAAAAATCCGAATCCCCATGTGGAGCATTCAAGCCAACTTTACTTTCCCTTATGGATTCATGATCAGCTTGGAAAACAAAGTGACATAGAATTGGGATATGTTAAAGAGGAAGAAATTAGGCTTAATTGCACTTTTGCGAAGAAGATGGTCATGGTCGCCCTTTGGTGTATACAATTGAAGCCGGATGATCGCCCTTCAATGAAGAAAGTAGTGGAGATGCTTGAAGGAGATGTGGAAAGCCTTGAAATGCCTCCTAAGCCTTCTTTGTATCCACATGAAACAATTGCAGGAGATCAAGGAAGCAACTCCAAACAGACAATGGTTGAAGGTGTGAAAAACGACTAG 954 0.4067 MAKGFKEKLGEGGFGTVFKGNLCSGPSVALKMLAKSKGKGKDFINEVATIGRVHHLNVVQLIGFCIEGPKHALVYEFMPNGSLDKFIFSKEGSIHLSLEKIYSIAIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFTPKISDFGLAKLYPVDNSIVTMTAARGTIGYMAPKLFYKNIGGVSYKADVYSFGMLLMEMASNRKNPNPHVEHSSQLYFPLWIHDQLGKQSDIELGYVKEEEIRLNCTFAKKMVMVALWCIQLKPDDRPSMKKVVEMLEGDVESLEMPPKPSLYPHETIAGDQGSNSKQTMVEGVKND* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5721 317 MobiDBLite consensus disorder prediction 298 317 - -
Lja1g5721 317 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 301 IPR045874 GO:0004672
Lja1g5721 317 SMART serkin_6 3 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5721 317 Gene3D Transferase(Phosphotransferase) domain 1 82 286 - -
Lja1g5721 317 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Lja1g5721 317 Pfam Protein tyrosine and serine/threonine kinase 5 277 IPR001245 GO:0004672|GO:0006468
Lja1g5721 317 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Lja1g5721 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lja1g5721 317 MobiDBLite consensus disorder prediction 282 317 - -
Lja1g5721 317 SUPERFAMILY Protein kinase-like (PK-like) 6 278 IPR011009 -
Lja1g5721 317 PIRSF ILK 5 286 - -
Lja1g5721 317 ProSiteProfiles Protein kinase domain profile. 3 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5721 317 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5721 Lja-Chr1 101442789 101444281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5721 1 309 Receptor kinase-like Gene Family AT4G18250 50.000 1.01e-104 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g5721 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5721 - - gmx:100305367 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5721 1 101442789 101444281 Lja1g5721 1 101442789 101444281 ECH