Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5720 ATGACAGAGTCTCGAGGTCTTTCCATAGTGATCACCCTAGTGTTCGTGCTTATTATCAGAAGTAGCAGCAGCACTCATGAATATGACCAGTGCGGAGAATCATCTTGTGGCCCTGACCAACCGCTTATTAGATTCCCGTTTCAACTCATCAAGGGGACGAAAGATCATAGTTGTAGTGATCCCATGTTTTGCCTATACTGTAGTAAAAATTCTGAGACAACTTTTGTACTCCCTACCTCTTCAGGACCAATTCAATTCCTTGTCAGGCACATAGACTACGATATCCAGGAAATTGATGTCTCTGACCCTGAAAATTGCCTCCCCAGCAAGTTTCTAAAACTCAACAATTCATCTTTCCAACCTTACCGATTGGACATGCACTCCTCAGAAACAAAAACCTCCTTCTTCAACTGCTCTTCACAAGATATGATCTCCTGCCCCATTTACGCTTCTGGTTATTTCGACAGTGTCCTCAAATTGGACCTTGTATCCTGTACCAAGATGTTTGATGTCACTGCTTCAGTCAACTCAGTTTACCTGCAGTTTAATTTATTGAGAATGATGTGGTCCAAGCCAAATTGTACCAAGTGCGAAGCAATGGGAAAAAAATGCAGATGGAAGAACAACAGCACAGACGGCGAAATTTGTTTTCACTGTAATGGCAAATCAATCCAGATTCCAAGATCTTTTATTTTCTCTGCTACAGGTTCAATTGCTTCGGGTCTGGTGTTAATTGTGGCCTTTAAGATCCACCGTTGTTATAGAAAGAAGGAAGAGGATCAAGCAAGAGTGGAGAAATTTTTAGAGGATTACAGGGCAGAGAAGCCTGCGAGATTCTCCTATGCTGATATAAAAAGAATCACCAATGGTTTTAAGGAAAAGCTAGGGGATGGAGCTCATGGAACAGTATTCCAAGGAAAACTCTCCAATGAAATTCCGGTGGCGGTGAAGAAGCTCAACAACAATTCAATGAAAGAAGAAGGGAAAGAGTTCATCAGTGAAGTGGAAATCATGGGCAAAATCCACCACATCAATGTCGCGTGTTTGCTCGGCTTCTGTGCAGAGGGAGTTCACCGTGCTCTCATCTACAACTTGTTTCCAAATGGTTCCTTACAGAATTTCATATTCCCACCTGATGATAAAGATCATTTCCTTGGCTGGGAAAAGCTGCAACATATCGGTCTCGGTATAGCGAAAGGGATTGAGTATCTCCATCATGGTTGCCATCATCCAATCCTTCACTTTGACATCAACCCTCACAATGTTTTGCTAGATGACAACTTCATTCCAAAAATTACTGATTTTGGTCTAGCCAAATTGTGTTCCAAGAATGTTAGTGTGGTGTCCATGACAGCTGCAAGGGGAACATTGGGATACATGGCACCCGAAGTTTTCTCCAGAAACTTCGGAAATGTGTCTTTTAAGTCTGATGTTTACAGTTATGGGATGTTGTTGCTGGAAATGGTAGGAGGGAGGAAGAACATAGACACTTTATCTACGGAAACTTTCCAAGTTCTGTATCCAGAATGGATCCATAGGTTATTGGAAGGAGATATTCATATCCATATTGAGGAGGATTGCGATGTGAAAATTGCAAAGAAACTTGCTATTGTTGGACTATGGTGCATTCAGTGGCAGCCGACAAATCGTCCATCCATAAAAGCAGTCATACAAATGCTGGAGACCAGAGAGGAAGACCAGCTAACAGTGCCTCCTAATCCATTTCATTCAACTACTTCCACCCCTACTAGCACTTCCGCAACACGACCTTTTCAAATGGAAGTGATTCAGGAATGA 1797 0.4218 MTESRGLSIVITLVFVLIIRSSSSTHEYDQCGESSCGPDQPLIRFPFQLIKGTKDHSCSDPMFCLYCSKNSETTFVLPTSSGPIQFLVRHIDYDIQEIDVSDPENCLPSKFLKLNNSSFQPYRLDMHSSETKTSFFNCSSQDMISCPIYASGYFDSVLKLDLVSCTKMFDVTASVNSVYLQFNLLRMMWSKPNCTKCEAMGKKCRWKNNSTDGEICFHCNGKSIQIPRSFIFSATGSIASGLVLIVAFKIHRCYRKKEEDQARVEKFLEDYRAEKPARFSYADIKRITNGFKEKLGDGAHGTVFQGKLSNEIPVAVKKLNNNSMKEEGKEFISEVEIMGKIHHINVACLLGFCAEGVHRALIYNLFPNGSLQNFIFPPDDKDHFLGWEKLQHIGLGIAKGIEYLHHGCHHPILHFDINPHNVLLDDNFIPKITDFGLAKLCSKNVSVVSMTAARGTLGYMAPEVFSRNFGNVSFKSDVYSYGMLLLEMVGGRKNIDTLSTETFQVLYPEWIHRLLEGDIHIHIEEDCDVKIAKKLAIVGLWCIQWQPTNRPSIKAVIQMLETREEDQLTVPPNPFHSTTSTPTSTSATRPFQMEVIQE* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5720 598 PANTHER RECEPTOR-LIKE KINASE 20 598 - -
Lja1g5720 598 ProSitePatterns Protein kinases ATP-binding region signature. 295 318 IPR017441 GO:0005524
Lja1g5720 598 MobiDBLite consensus disorder prediction 567 589 - -
Lja1g5720 598 MobiDBLite consensus disorder prediction 571 589 - -
Lja1g5720 598 Gene3D Transferase(Phosphotransferase) domain 1 366 572 - -
Lja1g5720 598 Pfam Protein tyrosine and serine/threonine kinase 291 560 IPR001245 GO:0004672|GO:0006468
Lja1g5720 598 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 598 IPR045874 GO:0004672
Lja1g5720 598 Pfam Wall-associated receptor kinase galacturonan-binding 31 102 IPR025287 GO:0030247
Lja1g5720 598 Gene3D Phosphorylase Kinase; domain 1 261 365 - -
Lja1g5720 598 SUPERFAMILY Protein kinase-like (PK-like) 273 563 IPR011009 -
Lja1g5720 598 ProSiteProfiles Protein kinase domain profile. 289 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5720 Lja-Chr1 101419801 101421949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5720 238 584 Receptor kinase-like Gene Family AT4G18250 40.833 6.20e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g5720 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5720 - - gmx:102662104 810.446