Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5718 ATGGCAGAGTCTCGAGGTCTTTCCATAGTGATCACCCTAGTGCTCGTGCTTATTATCAGAAGTAGCAGCACTCATGATCATGACCAGTGCGGAGAATCATCTTGCGGCCCTGACCAACCGCTGATTAGATTCCCGTTTCAACTCATCAAGGGGACGAAAGATCGTTGTGCTGATCCCATGTTTTGTCTATACTGTAGTGAAAATTCTGAGACAACTTTTGTACTCCCCACCTCTTCAGGTCCATTCCAATTCCTTGTCAGTGACATACAATACGATATCCAGGAAATTGATGTCTCTGACCCTGAAAATTGCCTACCAAGCAAGTTTCTAAAACTCCACAATTCATCTTTCCAACCTTATCGATTAGGCCCGGTATCAGAAACAAAAATCTCCTTCTTCAACTATATGATCTCCTGCCCCATATACGCTATTCGTTATTTGGACAGTATCCTTAGATGGGACCTTGCGTCCTGTACCAAGATGTTTGATGTCACTGCTTCAGTCAACGTAGATTACCTGCAGATTAATCGTTTGAGTTTGAGGTGGTCCAAACCAAATTGTGCCAAGTGCGAAGCAATGGGAAAAAAATGTAGATGGAAGAACAACAGCACACAGTATGAAATTGAGTGCTTTCACTGTAATGGTAAATCAATCCAAATTCCAAGATCTTTTATTTTCTCTGCTACAGGTTCAATTGCTTCGGGTCTGGTGTTAATTGTGGCATTTATGATCCACCGTTGTTACAGAAAGAAGGAAGAGGATCAAGCAAGAGTGGAGAAGTTTTTAGCGGATTACAGGGCAGAGAAGCCTGCGAGATTTTCCTATGCTGATATAAAAAGAATCACCAATGGTTTTAAGGAAAAGCTAGGGGATGGAGCTCATGGAACAGTGTTCCAAGGAAAACTCTCAAATGAAATTCCGGTGGCGGTGAAGAAGCTCAACAACAATTCAATGAAAGAAGAAGGGAAAGAGTTCATCAGTGAAGTGGAAATCATGGGCAAAATCCACCACATCAATGTCGCGTGTTTGCTCGGCTTCTGTGCAGAGGGAGTTCACCGTGCTCTCATCTACAACTTGTTTCCAAATGGTTCCTTACAGAATTTCATATTCCCACCTGATGATAAAGATCATTTCCTTGGCTGGGAAAAGCTGCAACATATCGGTCTCGGTATAGCGAAAGGGATTGAGTATCTCCATCATGGTTGCCATCATCCAATCCTTCACTTTGACATCAACCCTCACAATGTTTTGCTAGATGACAACTTCATTCCAAAAATTACTGATTTTGGTCTAGCCAAATTGTGTTCCAAGAATGTTAGTGTGGTGTCCATGACAGCTGCAAGGGGAACATTGGGATACATGGCACCCGAAGTTTTCTCCAGAAACTTCGGAAATGTGTCTTTTAAGTCTGATGTTTACAGTTATGGGATGTTGTTGCTGGAAATGGTAGGAGGGAGGAAGAACATAGACACTTTATCTACGGAAACTTTCCAAGTTCTGTATCCAGAATGGATCCATAGGTTATTGGAAGGAGATATTCATATCCATATTGAGGAGGATTGCGATGTGAAAATTGCAAAGAAACTTGCTATTGTTGGACTATGGTGCATTCAGTGGCAGCCGACAAATCGTCCATCCATAAAAGCAGTCATACAAATGCTGGAGACCAGAGAGGAAGACCAGCTAACAGTGCCTCCTAATCCATTTCATTCAACTACTTCCACCCCTACTAGCACTTCCGCAACACGACCTTTTCAAATGGAAGTGATTCAGGAATGA 1779 0.4238 MAESRGLSIVITLVLVLIIRSSSTHDHDQCGESSCGPDQPLIRFPFQLIKGTKDRCADPMFCLYCSENSETTFVLPTSSGPFQFLVSDIQYDIQEIDVSDPENCLPSKFLKLHNSSFQPYRLGPVSETKISFFNYMISCPIYAIRYLDSILRWDLASCTKMFDVTASVNVDYLQINRLSLRWSKPNCAKCEAMGKKCRWKNNSTQYEIECFHCNGKSIQIPRSFIFSATGSIASGLVLIVAFMIHRCYRKKEEDQARVEKFLADYRAEKPARFSYADIKRITNGFKEKLGDGAHGTVFQGKLSNEIPVAVKKLNNNSMKEEGKEFISEVEIMGKIHHINVACLLGFCAEGVHRALIYNLFPNGSLQNFIFPPDDKDHFLGWEKLQHIGLGIAKGIEYLHHGCHHPILHFDINPHNVLLDDNFIPKITDFGLAKLCSKNVSVVSMTAARGTLGYMAPEVFSRNFGNVSFKSDVYSYGMLLLEMVGGRKNIDTLSTETFQVLYPEWIHRLLEGDIHIHIEEDCDVKIAKKLAIVGLWCIQWQPTNRPSIKAVIQMLETREEDQLTVPPNPFHSTTSTPTSTSATRPFQMEVIQE* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5718 592 PANTHER RECEPTOR-LIKE KINASE 18 592 - -
Lja1g5718 592 ProSitePatterns Protein kinases ATP-binding region signature. 289 312 IPR017441 GO:0005524
Lja1g5718 592 PANTHER RUST RESISTANCE KINASE LR10-RELATED 18 592 IPR045874 GO:0004672
Lja1g5718 592 MobiDBLite consensus disorder prediction 565 583 - -
Lja1g5718 592 Pfam Protein tyrosine and serine/threonine kinase 285 554 IPR001245 GO:0004672|GO:0006468
Lja1g5718 592 SUPERFAMILY Protein kinase-like (PK-like) 268 557 IPR011009 -
Lja1g5718 592 Gene3D Phosphorylase Kinase; domain 1 256 359 - -
Lja1g5718 592 Gene3D Transferase(Phosphotransferase) domain 1 360 566 - -
Lja1g5718 592 MobiDBLite consensus disorder prediction 561 583 - -
Lja1g5718 592 Pfam Wall-associated receptor kinase galacturonan-binding 30 100 IPR025287 GO:0030247
Lja1g5718 592 ProSiteProfiles Protein kinase domain profile. 283 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5718 Lja-Chr1 101331722 101333765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5718 230 569 Receptor kinase-like Gene Family AT4G18250 41.926 3.43e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g5718 PK_Tyr_Ser-Thr 8.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5718 - - gmx:102662104 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5718 1 101331722 101333765 Lja1g5718 1 101331722 101333765 ECH