Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5717 ATGTGCCGTGTGCGAGCGTTACTGGTGTTCTTGCTGTTCACCCTTTCACTCCGGCGAGGTTGCAGTAACAGAGAGCAAAACCAGGCATGTCCCCCTTCTTCCTGCGGCAAAATCCCCAACATAAGTCATCCCTTTCGATTGAAAAATGACCCACAACACTGCGGCTACAAACAGTACGAGCTAGCTTGCGAAGTCGACAACGTGACAGTGTTGTCTCTGTACTCACGAAAATATCATGTGCAGGCCATCAACTACAACAATTACACGGTCCGAGTGGTTGATCCCGGAATTCTGGAGGCCAATCGCTCCTCCATTCCTCACTATTTCTGCAATACATATGATAACCGCCTCAGCTGCGCAGATCCATATCATGCCGTTGCCTCTGGTGAGCGAGGTTTCATGCATGTTGTGTACCTCAACTGTGCCCATCCAGTAACTCACAATCCTAGATATGTGGAACTGGATACCTCTAATGGGCACTCTGGAGGTTATATTTATGCTGTTGCCGGTGACTTAACAGCGGAGGATTTTGAAGTTGACTGCCGTGTGAAGCTGGTTTCTCCCACGTCTTGGTGGGGTATGGACGGTAACAAGTCTTCCTACGCTTTCATTCACAGGGCTCTGCTCTATGGATTCGAGATTTCATGGTTACATCGTTCCTGTGAGGATATTTGCAGTGGTTCAGGGAGCTACTGCATCTTCGACTCCAGCCAGAAACTTTACTGTTCGCACCAATGCCATTCTATTCTGGGACTGGGATATTCCAGTGATATATGCGGGAGATGGACTCAGCTGCGTTTGTATGCCAAAGACACTATTGTCGCTATCTTCATAGGAATTCTTGAAACAATAAAAGGACGAAACAACGATTATGAAGGTTTTACGAACTACAAATTAGGATTGACCACGGGACACTATGTTTTACCATCAATTTTGGCTGCAAGATTTCTTTTTGGGGTGACATTTTTTTTGGCACTTTTGATACATAAATGGAAAAAAAGACATTTGTCAATGTTTGAAAATATTGAAGTATATCTACAACAAAGTCACCTTGTGCCTATTCGATACTCACACAATGAAATAAAAAAGATGGCCAAAGGTTTCAAAGAAAAGTTGGGTGAAGGTGGCTTTGGCACTGTGTTCAAGGGGAACCTTCGTAGCGGGCCATGTGTGGCCCTAAAAATGTTGGCAAAATCAAAAGGTAAAGGGGAAGACTTCATCAATGAAGTAGCAACCATTGGAAGGGTGCATCATTTGAATGTGGTACAACTAATTGGATTTTGTATTGAGGGATCAAAACAGGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAATTTATTTTCTGCAAAGAAGGAAGTATACATTTAAGCCTTGAAAAAATATGTAGTATAGCAATTGGAGTAGCTCGTGGGATTGCTTATCTTCACCATGGGTGTGAGATGAAGATTTTGCATTTTGATATCAAGCCCCACAACATCTTACTAGATGAGAACTTCACCCCGAAGATCTCTGACTTTGGATTGGCCAAGCTATATCCAGTAGATAATAGCATTGTCACCATGACTGCAGCAAGAGGAACAATTGGGTACATGGCTCCGGAATTGTTCTACAAAAATATTGGTGGTGTGTCTTATAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAGATGGCAAGCAATAGGAAAAATCTGAATCCCCATGTGGAGCATTCAAGCCAACTTTACTTTCCCTTCTGGATTTATGATCAGCTTGGAAAACAGAATGACATAGAATTGGAAGATGTTAAAGAGGAAGAAGTGAAAATAGCGAAGAAGATGATCATGGTCGCGCTTTGGTGCATACAATTGAAGCCTGATGATCGCCCTTCAATGAAGGAAGTAGTGGAGATGCTTGAAGGAGATGTTGAAAACCTTGAAATGCCTCCGAAGCCTTCTTTGTATCCACATGAAACAATTGCAGGGGATCAAGGAAGCAACTCTGAACATACAATGCCGAGTGATTTCATTAGTTCTTCTATTGATCCTGTGGAAATTGTAGCTTATAGTCAGGTAGTAGGTATAGCTTGA 2082 0.4256 MCRVRALLVFLLFTLSLRRGCSNREQNQACPPSSCGKIPNISHPFRLKNDPQHCGYKQYELACEVDNVTVLSLYSRKYHVQAINYNNYTVRVVDPGILEANRSSIPHYFCNTYDNRLSCADPYHAVASGERGFMHVVYLNCAHPVTHNPRYVELDTSNGHSGGYIYAVAGDLTAEDFEVDCRVKLVSPTSWWGMDGNKSSYAFIHRALLYGFEISWLHRSCEDICSGSGSYCIFDSSQKLYCSHQCHSILGLGYSSDICGRWTQLRLYAKDTIVAIFIGILETIKGRNNDYEGFTNYKLGLTTGHYVLPSILAARFLFGVTFFLALLIHKWKKRHLSMFENIEVYLQQSHLVPIRYSHNEIKKMAKGFKEKLGEGGFGTVFKGNLRSGPCVALKMLAKSKGKGEDFINEVATIGRVHHLNVVQLIGFCIEGSKQALVYEFMSNGSLDKFIFCKEGSIHLSLEKICSIAIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFTPKISDFGLAKLYPVDNSIVTMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASNRKNLNPHVEHSSQLYFPFWIYDQLGKQNDIELEDVKEEEVKIAKKMIMVALWCIQLKPDDRPSMKEVVEMLEGDVENLEMPPKPSLYPHETIAGDQGSNSEHTMPSDFISSSIDPVEIVAYSQVVGIA* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5717 693 Pfam Wall-associated receptor kinase galacturonan-binding 30 94 IPR025287 GO:0030247
Lja1g5717 693 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 662 IPR045874 GO:0004672
Lja1g5717 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Lja1g5717 693 MobiDBLite consensus disorder prediction 654 673 - -
Lja1g5717 693 Gene3D Transferase(Phosphotransferase) domain 1 441 651 - -
Lja1g5717 693 SUPERFAMILY Protein kinase-like (PK-like) 351 637 IPR011009 -
Lja1g5717 693 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Lja1g5717 693 CDD STKc_IRAK 372 638 - -
Lja1g5717 693 SMART serkin_6 366 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5717 693 MobiDBLite consensus disorder prediction 657 673 - -
Lja1g5717 693 Gene3D Phosphorylase Kinase; domain 1 341 440 - -
Lja1g5717 693 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 662 - -
Lja1g5717 693 Pfam Protein kinase domain 369 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5717 693 ProSiteProfiles Protein kinase domain profile. 366 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5717 Lja-Chr1 101313134 101327605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5717 8 652 Receptor kinase-like Gene Family AT5G38260 34.783 5.16e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g5717 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5717 - - gmx:100305367 881.708