Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5709 ATGAGAGTTTCACCTAACTCGTGTGAGAGCAGTAGCAGCAACAACAACTCAACCCCCGAAACGACGTCGTTGGAGAAGGGAGGAAAACGACGCAATAGGGACTCGAACAAGCACCCGGTGTACCGTGGGGTCCGCATGCGGAACTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAATCTCGTATTTGGCTCGGCACGTTTTCCAACCCGGAAATGGCGGCCAGGGCGCACGACGCCGCCGCGCTCACCATCAAAGGAACCTCCGCCATCCTCAACTTCCCTCACCTCGCCGCCTCGCTGCCACGACCGGCGTCGCTTGCACCTCGTGATGTCCAAGCTGCCGCCGCCAAAGCTGCTCAAATGGAATTGCCATTGCCATTGCCGCTGCCATCGACGGAGGAGTTGTCGGCGGCGGCGTCGACGGTGGAGCTGAGCGAGATCATAGAGCTGCCGAGGTTAGAAACGAGTTATGAGTTGGTGGGGGAGGAGTTTGTGCAGCTGATGGACTCGCATGATGATGCTTGGATGTATCAGCAGCCGCCGCCGCTAATGCCGCCGTGGCTGCATTGTGATGCTGGTTCTTCTGATCATGATCATCAGTTTTCAGTGCCGGAGAGTAGTGAGGTTATATCAACTTTCGAGACTTTGATGTGGAATTATTAA 672 0.5655 MRVSPNSCESSSSNNNSTPETTSLEKGGKRRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSNPEMAARAHDAAALTIKGTSAILNFPHLAASLPRPASLAPRDVQAAAAKAAQMELPLPLPLPSTEELSAAASTVELSEIIELPRLETSYELVGEEFVQLMDSHDDAWMYQQPPPLMPPWLHCDAGSSDHDHQFSVPESSEVISTFETLMWNY* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5709 223 MobiDBLite consensus disorder prediction 1 40 - -
Lja1g5709 223 MobiDBLite consensus disorder prediction 24 40 - -
Lja1g5709 223 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Lja1g5709 223 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Lja1g5709 223 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Lja1g5709 223 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Lja1g5709 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 222 - -
Lja1g5709 223 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Lja1g5709 223 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Lja1g5709 223 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Lja1g5709 223 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 222 - -
Lja1g5709 223 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g5709 223 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5709 Lja-Chr1 100973466 100974137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5709 5 185 AP2-EREBP Transcription Factor Family AT5G11590 56.931 1.17e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g5709 AP2 2.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5709 K09286 - gmx:100305349 231.491