Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5704 ATGAGGTTGGAGAAATGCTGGTTTTGTTCTTCAACCGTATACCCTGGACATGGAATCCAGTTTGTCCGTAATGATGCCAAGATTTTTCGGTTCTGTAGATCCAAATGCCACAAGAACTTTAAAATGAAGAGGAATCCTCGTAAAGTAAAATGGACCAAGGCATATAGGCGAGTGCATGGAAAGGATATGACAAAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAATAGACCTGAGAGATATGACAGGAATGTTAAGGAGGATGTCCTCAAGGCCATTCCTAAGATTGCTAAGATCAGAGCTATCAGGGAGGAGACACACCATAAGAAAATGAAGCAAGGCAAACATGAAAAACTGCGGAGGGAGGCAGAAAAGGAGTTGAAGCAGGGCATCAACATGGTCAAAGCTCCTTCTGTTTTTCAACAGGATCCGTCCTACACTTTACCGGCAATCAAGGTCAAGGTTTCCCAACAGAAATCAGTGGAGAATCATCCTATGGAAGAATGA 507 0.428 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTKDSTFEFERKRNRPERYDRNVKEDVLKAIPKIAKIRAIREETHHKKMKQGKHEKLRREAEKELKQGINMVKAPSVFQQDPSYTLPAIKVKVSQQKSVENHPMEE* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5704 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Lja1g5704 168 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Lja1g5704 168 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Lja1g5704 168 SMART 4TRASH 6 44 IPR011017 -
Lja1g5704 168 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Lja1g5704 168 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Lja1g5704 168 PANTHER BNAA04G10330D PROTEIN 1 168 - -
Lja1g5704 168 PANTHER 60S RIBOSOMAL PROTEIN L24 1 168 IPR000988 -
Lja1g5704 168 Coils Coil 109 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5704 Lja-Chr1 100854613 100856498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5704 1 168 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 69.231 5.15e-79 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5704 K02896 - gmx:100778077 284.263