Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5703 ATGGAGAGAGTTATCAGAGGAAAGTATAAAGTCGGTCGCAAAATTGGTAGTGGATCCTTCGGTGAAATTTATATTGGGTCGCATGTCGACACTTCTGAGATTGTGGCCATCAAGATGGAGAACAAGAAAACTACACATCCGCAGTTACTGTATGAGGGCAAGTTATATAGTATTCTTCAAGGAGGATGTGGTATTCCGAGAATGAAATGGTGTGGTACTGATGGAGATAACAATGTTCTCGTTCTTGAACTTCTCGGACCGAATCTTGAAGATTTCTTATGCTACTGTGGTGGGAAGTTTTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTTACTAGGACAGAGTATTTGCATTCCAAGGGATTCTTGCATAGAGATATGAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAAGCTAACCAGGTTAATATGATTGATTTTGGACTTGCAAAAGGATATAGGGACCCTAATACAAACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGAACTGCACGCTATGCAAGTTGCAATACTCACCGAGGAATTGAGCAAAGTCGTCGAGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTATTTTATAAGAGGAAGCCTTCCTTGGCAGGGTCTACAAGCTGCCACCAAAATGCAAAAATTTGAAAAACTTTGTCAAACCAAGTTATCAACTTCCATTGAGGTACTTTGCAAGTCATATCCGATGGAGTTTAGTTCTTACTTTCATTATTGTCGCTGTTTAAAATTTGATCAACGACCAGATTATGGATTTTTGAAGGGCCTATTTCGCGATTTGTTCACCCGAAAAGGATACAAGTCTGACTATTTATTTGACTGGACGATTCTAAAATTTCAGCAGACAATGCTACAAAGTCAATCAAATGCTCCAATTGCTATCCTTAGTGATCTTGACCAACTAGATGTAGATAAGCATAAAGAAAATTATTCCATTCAAAATGCTGTAGAAAGACCATCAGTCAATTGTGATCCTCCACGTGTTTGTATGGAGATAAGGGCACCTAACGTTCAAAATATTAATCACAAGATTCAGACTGTGAATGTTGACTCATCTATTTCCAAAGTCTCTACAAATAATCTCTCAAAACCAAAAAGGCCCATGGAAACCTCAAAATTTGATCATGTATCTGGCAATAAATCTAGTGCTCTTGAAAGTTTTGTTCCTTCACTGCGCCGAGTTTCATCATTCAAATAG 1245 0.3823 MERVIRGKYKVGRKIGSGSFGEIYIGSHVDTSEIVAIKMENKKTTHPQLLYEGKLYSILQGGCGIPRMKWCGTDGDNNVLVLELLGPNLEDFLCYCGGKFSLKTVLMLADQMLTRTEYLHSKGFLHRDMKPDNFLMGLGRKANQVNMIDFGLAKGYRDPNTNKHIPYRENKNLTGTARYASCNTHRGIEQSRRDDLESLGYVLMYFIRGSLPWQGLQAATKMQKFEKLCQTKLSTSIEVLCKSYPMEFSSYFHYCRCLKFDQRPDYGFLKGLFRDLFTRKGYKSDYLFDWTILKFQQTMLQSQSNAPIAILSDLDQLDVDKHKENYSIQNAVERPSVNCDPPRVCMEIRAPNVQNINHKIQTVNVDSSISKVSTNNLSKPKRPMETSKFDHVSGNKSSALESFVPSLRRVSSFK* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5703 414 MobiDBLite consensus disorder prediction 372 398 - -
Lja1g5703 414 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5703 414 PANTHER CASEIN KINASE-RELATED 1 389 - -
Lja1g5703 414 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5703 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lja1g5703 414 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Lja1g5703 414 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 389 - -
Lja1g5703 414 Pfam Protein kinase domain 9 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g5703 414 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lja1g5703 414 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5703 Lja-Chr1 100828435 100841274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5703 9 215 AGC Kinase Gene Family AT3G08720 27.962 4.96e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lja1g5703 Pkinase 2.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5703 K08960 K08959 gmx:100782913 579.711