Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5697 ATGGCATCATCAAGCGCTTACAATTCACCTTGCGCAGCCTGCAAATTCCTGAGGAGGAAGTGCATGCCAGGGTGCATCTTTGCACCATACTTTCCACCGGAAGAGCCACAGAAATTCGCCAACGTGCACAAGATCTTTGGTGCGAGCAACGTTACCAAGCTTCTCAATGAGCTCCTCCCTCATCAGAGGGAGGACGCAGTAAACTCCCTCGCCTACGAAGCTGAGGCCCGTGTGAGGGACCCCGTCTACGGCTGCGTGGGAGCCATCTCTTACCTTCAGAGACAAGTCCAAAGGCTCCAAAAAGAACTCGATTCTGCTAACGCTGATCTTCTCCGCTTTGCCTACAATGAACTTCCTCAAGTAACTCTTCCTCCTGTGCCACCAACAATCACCACAATTCAACAAATGGTACCTTCTCAGAGGCAATATGGTGGGAGGTTTGGGAATTTTGAAGGGACTGGGTTTTATCGCCAATCTGCTACCACTTTCTCTTTTCCTTATGCTCTTCCATGGACTGATATTTCATCAGGAGGAGAAGGAGGAATAGGAGGTGAAGGAGGAGGAAAACCAGCAGTGTCTTCTGAGCTTGTGTCTCTCTCTGCTGCAATTAATCCAAACTTGTTTTGA 627 0.4912 MASSSAYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVQRLQKELDSANADLLRFAYNELPQVTLPPVPPTITTIQQMVPSQRQYGGRFGNFEGTGFYRQSATTFSFPYALPWTDISSGGEGGIGGEGGGKPAVSSELVSLSAAINPNLF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5697 208 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lja1g5697 208 Coils Coil 89 109 - -
Lja1g5697 208 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Lja1g5697 208 PANTHER ELONGATED PETIOLULE 1 1 185 - -
Lja1g5697 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5697 Lja-Chr1 100728259 100731415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5697 2 150 AS2 family AT5G63090 68.023 1.52e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g5697 LOB 2.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5697 - - gmx:100803667 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5697 1 100728259 100731415 Lja4g2316 4 25606854 25608562 ECH
Lja1g5697 1 100728259 100731415 Lja1g5697 1 100728259 100731415 ECH
Lja4g2316 4 25606854 25608562 Lja1g5697 1 100728259 100731415 PCT