Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5692 ATGGAGGACCTGAACCAAAATGTTACCGTTGTGACCCGTTCCAAAAATTCCACTCAGAACGAGCCAAAATCCAACGAGGAGCAAATGACGGTTCTGACGTGGATCACCACCACCGGCGACAACAATGCTGCACCCGAAGGTGCCGGAGTGGAGGCTTCGCCGGAAACCATCGCCGAAGAAGCATTTGTGGCTGCAGGATCGAAACAAGTGGTGAAAAGGGGGAGAGGGAGGCCTCGGAAGCATGACATTGATAGGAGACTGCTGTCTCGGGCGATTACGCCGCCGCCGGGGTTCGTTGTTCAACCTTTTGGAGGAGGCAATGGAGTTAAAAGAGGCAGGGGACGCCCTCGTGGCTCTGGGAGGCTGCAAATTCTGGCCTCCATTGAAACAGCTGGGGGAGGTTTCACACCTCGTGTGGTGACTGTGGACATTGGGGAGGACATGGTCAGCAAGATAACATCATGTTATCAGAGAGGCCCTATGTCAGTTTGTGTCATTTCTGCTACTGGTTTTGTATCAAGTGTCGCCATTCGTGAACTTGGTTCTACTAACCAATCGATTTATGAGGGCTGTTTTGGAATTTCGTCCTTAACTGGATCATACGCCTTTTCTGCTGGAATTGACGGTGCACGTACAAAAAGTTTGTTGCTGAATGTTACATTGGCTAAACCTGATGGACAGCTTTTTGGTGGGAGCATTGAGAGCTCCTTGATAGCTGCTAGCCCTATCCAGCTTATACGGGCCACATTCAAGCAAAAGATCACAAATCAAACTAGGAAAAGACGCTCATCTGGTTCATCCAATGCTCTCAGCATATCGGGTAATCTAGATTCAGAAAAAGAGGATCTCCAGAAAGCCCCTAGGTTAACAGAAGGAAAGATGATTTTCAAGAACCCAAATTAA 903 0.4873 MEDLNQNVTVVTRSKNSTQNEPKSNEEQMTVLTWITTTGDNNAAPEGAGVEASPETIAEEAFVAAGSKQVVKRGRGRPRKHDIDRRLLSRAITPPPGFVVQPFGGGNGVKRGRGRPRGSGRLQILASIETAGGGFTPRVVTVDIGEDMVSKITSCYQRGPMSVCVISATGFVSSVAIRELGSTNQSIYEGCFGISSLTGSYAFSAGIDGARTKSLLLNVTLAKPDGQLFGGSIESSLIAASPIQLIRATFKQKITNQTRKRRSSGSSNALSISGNLDSEKEDLQKAPRLTEGKMIFKNPN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5692 300 ProSiteProfiles PPC domain profile profile. 132 273 IPR005175 -
Lja1g5692 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 292 IPR039605 GO:0003680
Lja1g5692 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 137 251 IPR005175 -
Lja1g5692 300 PANTHER DUF296 DOMAIN PROTEIN 1 292 - -
Lja1g5692 300 PRINTS AT-hook-like domain signature 72 82 IPR017956 GO:0003677
Lja1g5692 300 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
Lja1g5692 300 Gene3D - 138 275 - -
Lja1g5692 300 MobiDBLite consensus disorder prediction 256 277 - -
Lja1g5692 300 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g5692 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 255 - -
Lja1g5692 300 MobiDBLite consensus disorder prediction 256 300 - -
Lja1g5692 300 SMART AT_hook_2 72 84 IPR017956 GO:0003677
Lja1g5692 300 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Lja1g5692 300 CDD DUF296 136 250 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5692 Lja-Chr1 100552804 100557417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5692 61 250 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 42.268 2.03e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5692 - - mtr:MTR_4g055833 202.601