Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5690 ATGTTTTCAAACAGTGCACCGTCTACCCCTCCGTCAGGGGTAGACGGTGCACTGAAAAGTGACAAGAAGGATTATTCCACTGCAATACTAGAACGCAAGAAGTCCCCTAACCGTCTAGTAGTTGATGAAGCAATTAATGATGATAATTCAGTGGTTACTCTGCACCCTGTTACAATGGAAAAGCTTCAACTTTTCCGGGGTGACACGGTTCTGATAAAGGGAAAGAAGAGAAGGGACACAATATGCATTGTTCTTACTGATGAACTGTGTGATGAGCCAAAAATAAGGATGAATAAGGTTGTTCGGGCTAATCTTCGAGTGCGGCTTGGAGATGTTGTCTCTGTTCATCAATGTCCTGATGTCAAGTATGGGAGTCGAGTTCACATCCTTCCAATTGATGATACTATTGAGGGTGTCACTGGCAACTTGTTTGATGCATATCTAAAGCCATATTTTCTGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTGTTCCTCGTTAGGGGTGGGATGCGAAGCGTTGAATTCAAAGTAATAGAGACTGATCCTGGAGAATACTGTATTGTGGCACCTGATACTGAAATCTTCTGTGAGGGGGAACCCATCAAAAGGGAAGATGAGGAGAAATTGAATGAAGTTGGCTATGATGATGTTGGTGGTGTTAGGAAGCAAATGGCGCAAATTCGAGAGCTTGTAGAGCTTCCACTTAGACACCCGCAACTCTTCAAATCAATTGGCGTTAAGCCCCCAAAAGGGATATTGCTTTATGGACCACCTGGTTCTGGGAAGACTCTGATTGCAAGAGCAGTGGCTAATGAGACAGGTGCATTCTTCTTTCTGATTAATGGACCCGAAATCATGTCGAAGCTGGCCGGTGAGAGCGAGAGCAATCTGAGGAAGGCGTTTGAAGAAGCTGAAAATAACTCCCCTTCCATCATTTTTATTGATGAGTTGGACTCGATTGCTCCCAAGAGAGAGAAGACACACGGTGAAGTGGAGAGGCGTATTGTTTCGCAGCTTTTAACTCTAATGGATGGCCTCAAGTCTCGATCGCATGTTATTGTAATTGGAGCCACAAATAGGCCTAATAGTATTGATCCTGCTCTCAGAAGGTTCGGAAGGTTTGATCGGGAGATTGACATCGGCACACCGGACGAAATTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAATATGAAACTTTCAGATAATGTTGATCTTGAAAGAGTAGCTAGAGATACCCATGGTTATGTTGGAGCAGATCTTGCTTCTCTTTGCACAGAGGCTGCACTGCAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCCGAGGTGTTGAGTTCCATGGCTGTGACCAACGAACACTTCCAAACTGCTTTAGGTTCTTCAAACCCATCTGCCCTGCGCGAAACAGTTGTGGAGGTTCCAAATGTTTCATGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAGCTTCAAGAGACTGTTCAATACCCAGTGGAACATCCTGAAAAGTTTGAGAAATTCGGCATGGCACCTTCCAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTGTTAGCAAAAGCAATTGCTAATGAATGCCAAGCCAACTTCATAAGTGTCAAGGGCCCTGAGTTGCTGACAATGTGGTTTGGTGAAAGCGAGGCCAACGTTCGCGAAATATTTGATAAGGCCCGGGGATCAGCTCCATGTGTGCTTTTCTTTGATGAACTTGACTCAATTGCAACCCAGCGAGGCAGTTCTGTAGGGGATGCTGGCGGTGCTGCAGATAGGGTGTTGAACCAACTATTAACAGAAATGGATGGTATGACTGCTAAGAAAACGGTTTTCATCATCGGCGCAACAAACAGACCAGACATCATAGACCCTGCATTGCTCAGGCCGGGACGATTGGACCAACTGATTTACATTCCTTTACCGGATGAAAGTTCACGCCTTCAAATCTTCAAGGCGTGTTTGAGGAAGTCGCCAATCTCTAAGGATGTTGACCTGGCTGCTCTGGCCCGTTACACTCAGGGATTTAGTGGTGCTGATATTACTGAAATTTGTCAACGAGCTTGCAAATATGCCATCAGAGAAGATATTGAAAAGGGTATAGAGCAGGAAAGAAGAAAAAGAGAGAACCCAGAAGCCATGGAAGAAGATGAGACTGAAGAGGAGGTAGCTGAGATAAAACCAGCTCACTTTGAAGAGTCAATGAAGTTTGCTCGCCGGAGTGTCAGTGATGCTGACATCAGGAAATACCAGGTGTTTGCTCAGACCTTGCAACAGTCTCGTGGAATCGGAACGGAGTTTCGGTTTCCTGACCGAAATGAGAACACTGCAACAGCAACAGCCTCTGATCCTTTCTCGTCTGTTACCGCAGATGGAGAGGATGATCTCTACAGTTAA 2451 0.4529 MFSNSAPSTPPSGVDGALKSDKKDYSTAILERKKSPNRLVVDEAINDDNSVVTLHPVTMEKLQLFRGDTVLIKGKKRRDTICIVLTDELCDEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGSRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCIVAPDTEIFCEGEPIKREDEEKLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAENNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGTPDEIGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLASLCTEAALQCIREKMDVIDLEDETIDAEVLSSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLAALARYTQGFSGADITEICQRACKYAIREDIEKGIEQERRKRENPEAMEEDETEEEVAEIKPAHFEESMKFARRSVSDADIRKYQVFAQTLQQSRGIGTEFRFPDRNENTATATASDPFSSVTADGEDDLYS* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5690 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 774 IPR027417 -
Lja1g5690 816 Gene3D - 476 659 IPR027417 -
Lja1g5690 816 ProSitePatterns AAA-protein family signature. 629 647 IPR003960 GO:0005524|GO:0016887
Lja1g5690 816 PANTHER AAA-FAMILY ATPASE 18 790 - -
Lja1g5690 816 Pfam AAA+ lid domain 405 447 IPR041569 -
Lja1g5690 816 Pfam AAA+ lid domain 681 722 IPR041569 -
Lja1g5690 816 Gene3D - 218 382 IPR027417 -
Lja1g5690 816 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 18 790 - -
Lja1g5690 816 SMART AAA_5 522 661 IPR003593 -
Lja1g5690 816 SMART AAA_5 249 385 IPR003593 -
Lja1g5690 816 MobiDBLite consensus disorder prediction 789 805 - -
Lja1g5690 816 Gene3D - 121 217 - -
Lja1g5690 816 MobiDBLite consensus disorder prediction 782 816 - -
Lja1g5690 816 Gene3D - 384 475 - -
Lja1g5690 816 Pfam Cell division protein 48 (CDC48), N-terminal domain 38 119 IPR003338 -
Lja1g5690 816 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Lja1g5690 816 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5690 816 SMART CDC48_2_2 138 204 IPR004201 -
Lja1g5690 816 Pfam ATPase family associated with various cellular activities (AAA) 526 659 IPR003959 GO:0005524|GO:0016887
Lja1g5690 816 Pfam ATPase family associated with various cellular activities (AAA) 253 382 IPR003959 GO:0005524|GO:0016887
Lja1g5690 816 Gene3D - 16 120 - -
Lja1g5690 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 474 IPR027417 -
Lja1g5690 816 SUPERFAMILY Cdc48 domain 2-like 120 212 IPR029067 -
Lja1g5690 816 Pfam Cell division protein 48 (CDC48), domain 2 140 203 IPR004201 -
Lja1g5690 816 Gene3D - 663 772 - -
Lja1g5690 816 SUPERFAMILY ADC-like 34 118 IPR009010 -
Lja1g5690 816 CDD AAA 492 659 - -
Lja1g5690 816 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 39 776 IPR005938 GO:0016787
Lja1g5690 816 SMART CDC48_N_2 38 121 IPR003338 -
Lja1g5690 816 MobiDBLite consensus disorder prediction 721 741 - -
Lja1g5690 816 CDD AAA 219 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5690 Lja-Chr1 100514767 100521047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5690 518 717 Calmodulin-binding Proteins AT3G56690 41.379 2.20e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5690 K13525 - gmx:100798680 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5690 1 100514767 100521047 Lja1g5690 1 100514767 100521047 ECH