Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5689 ATGGGTATCAACATAAAGGGACAAGTCGAAAAGGTGAATGGAAAAGAACTGAGTTACACTGAATTTGCAGAGAAATTTATGAAGAAGAACCAGCCTGTGGTGCTCACTGGACTAATGGACCATCATTGGAAAGCTTGCACTGACTGGGTCACCCTTCATGGCCAACCCAATTTTCAGTTTTTCTCCACTCATTTTGGAGCTTCTAGAGTTCAGGTTGCAGATTGTGATACCAGAGATTTCACTGATCAGAAAAGGGAGGAGATGTTGGTTTCAGATTTCATAGGACGTTGCTTTCAAGTTGAGGATTCTGCAGTTCAGTGTAATAATGAAAATGATAAGAGTGATGGTCAATCTGTGTCTGTACTTTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCAGAATATGAAGCATACAGCACACCTATGTTCTTTTGCGATGATTGGCTCAACTTTTATCTTGACAACTTCAGATTGCATACAGATTCAGACACTGACCAGCAAAATCAGGAAATATGTTGCTCTGATTATCGATTTGTGTACATGGGGGTAAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCTGCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATGTCAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATATCCTGGTTTTAAAAATGCTACCTGGTTAGAATGCACGCAAGAGGCAGGTGAAATCATATTCGTTCCCAGTGGATGGTATCATCAAGTTCATAATTTGGAGGACACAATATCTATAAACCACAACTGGTTCAATGCCTATAACCTTTCATGGGTGTGGAATTTACTTTTAAAGGACTACAATGAGGCCAAGGAATACATAGAAGACATAAGGAATATATGTGACAATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACATCTTTGCTTTCATATCATATTTCACCTTGGCCAACCTGGTGCTGCTTTGCTATATAAATGGAAGAGGTGGAAGTACTATAGGAAGTTCATCAACAGTAGCTCAGCATTTATCTATGAATCTCGGGTCTGTAAGGAAGATTGCCTCAGATATGAAACACGTGCACGCTCTGGAAGGGAATCATGATTGCATCGTGGATATGATCAAAGCACTGGAAGATCCTAGGTTTTCCAAATTGTGCATGCAAGTGGGAAGAACATATTTAATGATACATGAACAAACTCATTTGTCCTCTGATCTTGAGAGCACTTCAATGGTTGATTTGGTGGGTCTCAATGTTTTGAAAGCATGCCTTCCTTCTCAGGTCTACACACCTGAAGATCTCATTAAATTTATAGACACTGCTGTTTCATGTTGCTACGTTGAGTCATCTGTGCTACATGTTGCTTGA 1461 0.3963 MGINIKGQVEKVNGKELSYTEFAEKFMKKNQPVVLTGLMDHHWKACTDWVTLHGQPNFQFFSTHFGASRVQVADCDTRDFTDQKREEMLVSDFIGRCFQVEDSAVQCNNENDKSDGQSVSVLYLKDWHFVKEYPEYEAYSTPMFFCDDWLNFYLDNFRLHTDSDTDQQNQEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLVFDRNVKSCVYNIFDEVSDSKYPGFKNATWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLKDYNEAKEYIEDIRNICDNFEGLCQRNLAANTGMNFYDIFAFISYFTLANLVLLCYINGRGGSTIGSSSTVAQHLSMNLGSVRKIASDMKHVHALEGNHDCIVDMIKALEDPRFSKLCMQVGRTYLMIHEQTHLSSDLESTSMVDLVGLNVLKACLPSQVYTPEDLIKFIDTAVSCCYVESSVLHVA* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5689 486 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 474 - -
Lja1g5689 486 Pfam Cupin-like domain 21 285 IPR041667 -
Lja1g5689 486 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 474 - -
Lja1g5689 486 Gene3D Cupin 3 286 - -
Lja1g5689 486 ProSiteProfiles JmjC domain profile. 130 302 IPR003347 -
Lja1g5689 486 SMART cupin_9 122 302 IPR003347 -
Lja1g5689 486 SUPERFAMILY Clavaminate synthase-like 7 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5689 Lja-Chr1 100509314 100514152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5689 7 294 Glycosyltransferase AT1G78280 24.662 5.07e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja1g5689 Cupin_8 2.3e-25 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5689 - - gmx:100803814 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5689 1 100509314 100514152 Lja1g5689 1 100509314 100514152 ECH