Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5670 ATGCAAACCGCGGCGGCGTTCTCCACCTTCTCCCCCTCCCTCCCCCACCGCAACCTCCACCGCACCAACCACCTCCGGCGACCTTCCTTCTCCGTCCGCCTCTCTTCCAAACTCACCGACGGCGGCGCAAATCCAAATGGCGCCTCTTCTTCTTCCTCATCCTCCTTTCCTCGCCGATCCTGGCACCTTGCGAATTCCTCTCCCTTCAAGTTCAGACCTCTCGCCTCTGATTCATCGCCGCCTAAAGCCGCTTCCTCCGTCCCTGACAGCGCCGGCTCCGCTGAACCTTCTTCGTCCTTGATGAAAACTCTCCAGCTTGGTTCCTTGTTTGGCCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAGGTTTTGAAGGCGTTCCATTACCCGGTAACCATTACTGCGGTTCAATTTGCTGTTGGGACTGTCCTTGTATCGGTGATGTGGGGTTTAAACCTCTATAAGAGGCCAAAGCTCAGTGGTGCCCAGCTTGCAGCAATATTGCCATTGGCCCTGGTGCATACTTTAGGGAACCTTTTCACTAATATGAGTCTTGGAAAGGTTGCTGTGTCATTCACTCACACGATCAAAGCCATGGAGCCTTTCTTTTCTGTGATCCTTTCTGCCATGTTCCTTGGAGAGAAACCTACGCCGTGGGTGGTTGGTTCCCTCTTGCCTATAGTTGGTGGAGTTGCGCTGGCATCTCTTACTGAGGCCTCTTTTAATTGGGCTGGATTTTGGAGTGCAATGGCTTCCAATGTGACCAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGGATTCTATGGACAACATCACTCTCTTCTCTATAATAACAGTAATGTCATTCTTCTTGTTAGCACCCGTGGCTGTCTTCATGGAGGGTGTTAAATTTACCCCTGCTGCACTGCAGGCTGCTGGGGTAAACGTCAGACAACTGTACATCAGATCTCTTCTAGCTGCACTCTGTTTCCATGCATATCAGCAAGTTTCTTATATGATATTGCAGAGGGTATCACCTGTAACCCACTCGGTGGGCAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTTATCTTCTTCCAGACACCTGTCTCTCCTGTGAATGCCATGGGGACTGCTTTAGCTCTTACCGGTGTTTTCCTCTATTCAAGGGTGAAGCGAATTAAACCAAAGACAGCTTAA 1215 0.4963 MQTAAAFSTFSPSLPHRNLHRTNHLRRPSFSVRLSSKLTDGGANPNGASSSSSSSFPRRSWHLANSSPFKFRPLASDSSPPKAASSVPDSAGSAEPSSSLMKTLQLGSLFGLWYLFNIYFNIYNKQVLKAFHYPVTITAVQFAVGTVLVSVMWGLNLYKRPKLSGAQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEKPTPWVVGSLLPIVGGVALASLTEASFNWAGFWSAMASNVTNQSRNVLSKKAMVKKEDSMDNITLFSIITVMSFFLLAPVAVFMEGVKFTPAALQAAGVNVRQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNAMGTALALTGVFLYSRVKRIKPKTA* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5670 404 Pfam Triose-phosphate Transporter family 104 394 IPR004853 -
Lja1g5670 404 MobiDBLite consensus disorder prediction 28 59 - -
Lja1g5670 404 PANTHER SOLUTE CARRIER FAMILY 35 84 387 - -
Lja1g5670 404 SUPERFAMILY Multidrug resistance efflux transporter EmrE 318 398 - -
Lja1g5670 404 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 104 402 IPR004696 GO:0016021|GO:0022857|GO:0055085
Lja1g5670 404 SUPERFAMILY Multidrug resistance efflux transporter EmrE 152 241 - -
Lja1g5670 404 MobiDBLite consensus disorder prediction 72 96 - -
Lja1g5670 404 MobiDBLite consensus disorder prediction 1 59 - -
Lja1g5670 404 MobiDBLite consensus disorder prediction 79 96 - -
Lja1g5670 404 MobiDBLite consensus disorder prediction 1 18 - -
Lja1g5670 404 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 84 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5670 Lja-Chr1 100121330 100125643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5670 1 402 Antiporters AT5G33320 68.193 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5670 K15283 - gmx:100804563 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5670 1 100121330 100125643 Lja4g2290 4 25278084 25281707 ECH
Lja1g5670 1 100121330 100125643 Lja1g5670 1 100121330 100125643 ECH
Lja4g2290 4 25278084 25281707 Lja1g5670 1 100121330 100125643 PCT